View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_37 (Length: 283)
Name: NF1296_low_37
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 837991 - 838244
Alignment:
| Q |
1 |
aaattctggtcgaaggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatatatattattacttgtttgaattta |
100 |
Q |
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| T |
837991 |
aaattatggtcgaaggctaaggattactttgaaagtttggtttcaattcattgaaaatgagtttctcatccacatatatattattacttgtttgaattta |
838090 |
T |
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| Q |
101 |
tgttacatgtatgttcctaaaatccttatcagtttataataatatatattgttcaaaatattgtgtgatggcttatccgcttaattaaggtacttagtta |
200 |
Q |
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| T |
838091 |
tgttacatgtatgttcctaaaatccttatcagtttataataatatatattgttcaaaatattgtgtgatggcttatccgcttaattaaggtacttagtta |
838190 |
T |
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| Q |
201 |
cataatagagttgcacttaatataccaaaaggtgaagagaccctactaaaaata |
254 |
Q |
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| T |
838191 |
cataatagagttgcacttaatataccaaaaggtgaagagaccctactaaaaata |
838244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 829438 - 829339
Alignment:
| Q |
3 |
attctggtcgaaggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatatatattattacttgtttgaatttatg |
102 |
Q |
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| T |
829438 |
attctggtcggaagctaaggattactt-gaaagtttggtttcgattctatgaaagtgagtttctctttcaca-------tatgacttgtttgaatttatg |
829347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 10482452 - 10482528
Alignment:
| Q |
21 |
ggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatatatattattacttgtttgaatttatgtt |
104 |
Q |
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| T |
10482452 |
ggattacgttgaaagtttggtttcgactcattgaaagtgagtttctcttccaca-------tattacttgtttgaatttatgtt |
10482528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10468313 - 10468369
Alignment:
| Q |
21 |
ggattactttgaaattttggtttcaattcattgaaaatgagtttctcttccacatat |
77 |
Q |
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| T |
10468313 |
ggattacgttgaaagtttggttttgactcattgaaagtgagtttctcttccacatat |
10468369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 25915111 - 25915057
Alignment:
| Q |
15 |
ggctaaggattactttgaaattttggtttcaattcattgaaaatgagtttctctt |
69 |
Q |
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||||||||||||| |||||| ||||||||||| | |||||| |||||||||||| |
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| T |
25915111 |
ggctaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttctctt |
25915057 |
T |
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