View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296_low_4 (Length: 606)

Name: NF1296_low_4
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296_low_4
NF1296_low_4
[»] chr1 (3 HSPs)
chr1 (1-392)||(47573006-47573395)
chr1 (70-145)||(21399726-21399801)
chr1 (214-266)||(47582660-47582713)
[»] chr5 (1 HSPs)
chr5 (28-155)||(35037578-35037706)
[»] chr2 (2 HSPs)
chr2 (1-52)||(38833515-38833566)
chr2 (107-155)||(5948950-5948997)
[»] chr3 (1 HSPs)
chr3 (102-146)||(38970091-38970135)
[»] chr8 (1 HSPs)
chr8 (10-44)||(8705705-8705739)
[»] chr7 (3 HSPs)
chr7 (31-145)||(36851018-36851134)
chr7 (96-144)||(28820750-28820798)
chr7 (1-53)||(28820801-28820853)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 47573006 - 47573395
Alignment:
Q  1 caaaggatcaaagaaaacacaaataacaaacaatggaacatgattgtttgttttcacagtttggccaattgcctgcctctgtgattatagagtagctata 100  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  | ||||||| |||||||    
T  47573006 caaaagatcaaagaaaacacaaataacaaacaatggaacacgattgtttgttttcgcagtttggccaattgcctgcctctg--actatagagaagctata 47573103  T
Q  101 attccttatactacttgagcgaattagggtttacagtgttacaagcacatatataataattaactaccccttgtccctcttctatgtctatatagcagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47573104 attccttatactacttgagcgaattagggtttacagtgttacaagcacatatataataattaactaccccttgtccctcttctatgtttatatagcagcc 47573203  T
Q  201 atactcaacaaaggaaaatataagtagttcatcaatattttaagaactaggagagggtttagctttnnnnnnnnnnnnnnnnnntggcaagatgttatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||    
T  47573204 atactcaacaaaggaaaatataagtagttcatcaatattttaagaactaggagagggtttagctttaaaaaagaaaagaaaaaatggcaagatgttatgt 47573303  T
Q  301 ttcaatgggaggcccaagagaaggggatacatgattttggtcctgnnnnnnntcctgattagtcaagttggaaaagaatacgttgtcttata 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  47573304 ttcaatgggaggcccaagagaaggggatacatgattttggtcctgaaaaaaatcctgattagtcaagttggaaaagaatacgttgtcttata 47573395  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 21399726 - 21399801
Alignment:
Q  70 tgcctgcctctgtgattatagagtagctataattccttatactacttgagcgaattagggtttacagtgttacaag 145  Q
    ||||| |||||| || |||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||    
T  21399726 tgcctacctctgagactatagagtagctataattccgtatattacttgagcgaattaaggtttatagtgttacaag 21399801  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 47582660 - 47582713
Alignment:
Q  214 gaaaatataagtagttcatcaatattttaagaactaggagagggt-ttagcttt 266  Q
    |||||||||| ||||||||||||||||||  || ||||||||||| ||||||||    
T  47582660 gaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttt 47582713  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 35037706 - 35037578
Alignment:
Q  28 aaacaatggaacatgattgtttgttttcacagtttggccaattgc--ctgcctctgtgattatagagtagctataattccttatactacttgagcgaatt 125  Q
    |||||||||||| |||| |||||||| | || ||||||||||||   |||||||||||| ||||||||||||||||||||  ||| |||||||| | |||    
T  35037706 aaacaatggaacttgatcgtttgtttacgcaatttggccaattgtgtctgcctctgtgactatagagtagctataattccgaatattacttgagtgtatt 35037607  T
Q  126 agggtttacagtgttacaagcacatatata 155  Q
    |||||||||| |||||||||| ||||||||    
T  35037606 agggtttacaatgttacaagc-catatata 35037578  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38833515 - 38833566
Alignment:
Q  1 caaaggatcaaagaaaacacaaataacaaacaatggaacatgattgtttgtt 52  Q
    |||| ||| |||||||||||||||  ||||||||||||||||||||||||||    
T  38833515 caaaagattaaagaaaacacaaattgcaaacaatggaacatgattgtttgtt 38833566  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 5948950 - 5948997
Alignment:
Q  107 tatactacttgagcgaattagggtttacagtgttacaagcacatatata 155  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||||||||    
T  5948950 tatattacttgagtgaattagtgtttacagtgttacaagc-catatata 5948997  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 38970135 - 38970091
Alignment:
Q  102 ttccttatactacttgagcgaattagggtttacagtgttacaagc 146  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||    
T  38970135 ttccatatattacttgagtgaattagggtttacagtgttacaagc 38970091  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 8705705 - 8705739
Alignment:
Q  10 aaagaaaacacaaataacaaacaatggaacatgat 44  Q
    ||||||||||||||| |||||||||||||||||||    
T  8705705 aaagaaaacacaaatcacaaacaatggaacatgat 8705739  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 36851018 - 36851134
Alignment:
Q  31 caatggaacatgattgtttgttttcacagtttggccaattgc--ctgcctctgtgattatagagtagctataattccttatactacttgagcgaattagg 128  Q
    ||||||||||  || |||||||| | || || |||||||||   |||||| || || ||||||||||||| | ||||  ||| || ||||| ||||||||    
T  36851018 caatggaacacaatcgtttgtttacgcaattcggccaattgtgtctgcctatgcgactatagagtagctacagttccgaatattatttgagtgaattagg 36851117  T
Q  129 gtttacagtgttacaag 145  Q
    ||||||| |||||||||    
T  36851118 gtttacaatgttacaag 36851134  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 28820798 - 28820750
Alignment:
Q  96 ctataattccttatactacttgagcgaattagggtttacagtgttacaa 144  Q
    ||||| |||| |||| |||||||| ||||||| ||||||||||||||||    
T  28820798 ctatagttccatatattacttgagtgaattagagtttacagtgttacaa 28820750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28820853 - 28820801
Alignment:
Q  1 caaaggatcaaagaaaacacaaataacaaacaatggaacatgattgtttgttt 53  Q
    |||| ||| ||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  28820853 caaaagattaaataaaacacaaatcacaaacaatggaacacgatcgtttgttt 28820801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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