View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1296_low_46 (Length: 237)
Name: NF1296_low_46
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 36451819 - 36451956
Alignment:
| Q |
1 |
ttatggtagtgctcatcgtgcaacagctataggggatccaagtccacataaagacgggcgtaaaccaattggaggtggcataatgagtagtgatgatggc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36451819 |
ttatggtggtgctcatcgtgcaacagctataggggatccaagtccacataaagacaggcgtaaaccaattggaggtggcataatgagtagtgatgatggc |
36451918 |
T |
|
| Q |
101 |
tataataatggatatggtggtgacaaagatggacgcag |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36451919 |
tataataatggatatggtggtgacaaagatggacgcag |
36451956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 36452213 - 36452342
Alignment:
| Q |
14 |
catcgtgcaacagctataggggatccaagtccacataaagacgggcgtaaaccaattggaggtggca---taatgagtagtgatgatggctataat---a |
107 |
Q |
| |
|
|||||||||||| | | |||||||||| ||| | |||| || |||||||||||||||||||||| ||| ||||| | ||||||||||| || | |
|
|
| T |
36452213 |
catcgtgcaacaagtgtgggggatccaaatccctaccaagaaggccgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatcatgata |
36452312 |
T |
|
| Q |
108 |
atggatatggtggtgacaaagatggacgca |
137 |
Q |
| |
|
||||||| |||||||||||||| ||||||| |
|
|
| T |
36452313 |
atggatacggtggtgacaaagaaggacgca |
36452342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 36452015 - 36452141
Alignment:
| Q |
8 |
agtgctcatcgtgcaacagctataggggatccaagtccacataaagacgggcgtaaaccaattggaggtggca---taatgagtagtgatgatggct--- |
101 |
Q |
| |
|
|||| ||| ||||||||| || | |||||||||| ||| | ||||| || |||||||||||||||||||||| ||| ||||| | ||||||||| |
|
|
| T |
36452015 |
agtgatcaccgtgcaacacctgttggggatccaaatccctacaaagaaggtcgtaaaccaattggaggtggcaacctaaggagtactcatgatggctatc |
36452114 |
T |
|
| Q |
102 |
ataataatggatatggtggtgacaaag |
128 |
Q |
| |
|
|| |||| ||||| ||||||||||||| |
|
|
| T |
36452115 |
atgataacggatacggtggtgacaaag |
36452141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University