View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_5 (Length: 550)
Name: NF1296_low_5
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 48 - 539
Target Start/End: Complemental strand, 35212485 - 35211997
Alignment:
| Q |
48 |
acttctaactgtctctaactgtcaaaaaagttgtcaacaagctgttgatagatggcattgatgaatgtggca------------ctagatgagattactt |
135 |
Q |
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| T |
35212485 |
acttctaattgtctctaactgtcaaaaaagttgtcaacaagctgttgatagatggcattgatgaatgtggcaacttagttggcactagatgagattactt |
35212386 |
T |
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| Q |
136 |
gttcgtcaagtaatgtcnnnnnnncattcaatcttaacacacatatttgagagacaaaataaagtatattannnnnnnnnnnnatgaagttaaactaatt |
235 |
Q |
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| T |
35212385 |
gttcgtcaagtaatgtctttttttcattcaatcttaacacacatatttgagagacaaaataaagaatattatttttcttttttatgaagttaaacta--- |
35212289 |
T |
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| Q |
236 |
catagacattggcacgggagtgtatcggacttgagacaagtatattgttttactttggagtatatcattttacttgaaaaatggtctacaatacaaagat |
335 |
Q |
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| T |
35212288 |
------------cacgggagtgtatcggacttgagacaattatattgttttactttggagtatatcattttacttgaaaaatggtctacaatacaaagag |
35212201 |
T |
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| Q |
336 |
gcatacgcgatcaaaagtattgctatgactaacttaatttatattggacgacctcacaaggctatgaacaatcaatcatattatttactcgtttacacca |
435 |
Q |
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||||||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212200 |
gcatacgcgatcaaaagtattactatgattaacctaattcatattggacgacctcacaaggctatgaacaatcaatcatattatttactcgtttacacca |
35212101 |
T |
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| Q |
436 |
agctcgcttgaattcaagaaattgagagtagaagagtgatagtacacgtaaagaaaatattgattttgatttattttctaatggaatataatttggctaa |
535 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35212100 |
agctcgcttgaattcaagaaattgtgagtagaagagtgatagtacacgtaaagaaaatattgattttgatttattttctaatggaatataattcggctaa |
35212001 |
T |
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