View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_6 (Length: 536)
Name: NF1296_low_6
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 70 - 508
Target Start/End: Original strand, 25492650 - 25493088
Alignment:
| Q |
70 |
agatgaagtcgagatgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattccttaaagtccatgatgaagnnnnnnnnnnncaata |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |
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| T |
25492650 |
agatgaagtcgagatgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattacttaaagtccatgatgaagaaataaaaaaacacaa |
25492749 |
T |
|
| Q |
170 |
tataattctccaatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgaccaa |
269 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
25492750 |
tataattctcctatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttactaataccatcgttaattactgactaa |
25492849 |
T |
|
| Q |
270 |
caacatggttaattaacgatgtatcactagcacattatcggtaagatgcatctaacttggttaaccattttcaattaatatgttgcaacatttttcttgt |
369 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||||||| |
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| T |
25492850 |
caacatggttaattaacgatgtatcactggcacattatcggtaagctgcatctaacttagttaaccatggccaattaatatgttgcaacatgtttcttgt |
25492949 |
T |
|
| Q |
370 |
ataattaattgtttcaatttggtctctccctgtacttacaatacaacaaaaatgagatttagtaacatttgaaaaatattattgttactaaaggtcctaa |
469 |
Q |
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|||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25492950 |
ataattaattgtttcagtttggcctctccatgtacttacactacaataaaaatgagatttagtaacatttgaaaaatattattgttactaaaggtcctaa |
25493049 |
T |
|
| Q |
470 |
atgttgtagtattatgaattgaaaattgcattgcatatt |
508 |
Q |
| |
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| T |
25493050 |
atgttgtagcattatgaattgaaaattgcattgcatatt |
25493088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 70 - 407
Target Start/End: Original strand, 25501029 - 25501366
Alignment:
| Q |
70 |
agatgaagtcgagatgaaacaagccaaggggaaagaaactgatctctttaatcttggccttattccttaaagtccatg-atgaagnnnnnnnnnnncaat |
168 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||| || | | || |
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| T |
25501029 |
agatgaagtcgagatgaaacaagccaaggggaaagtaactaatctctttaatcttggcctttttacttaaagtccatccataatgaagaaaaaaaacaca |
25501128 |
T |
|
| Q |
169 |
atataattctccaatccctgagaggtaattatcttcttaaacatgatatgacaatattaattgaaaattatttaccaataccatcgttaattactgacca |
268 |
Q |
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|||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
25501129 |
atataattctcctagccctgag--gtaattatcttcttaaacatgatatgacaatattatatgaaaattatttaccaataccatcgttaattactgacta |
25501226 |
T |
|
| Q |
269 |
acaacatggttaattaacgatgtatcactagcacattatcggtaagatgcatctaac-ttggttaaccattttcaattaatatgttgcaacatttttctt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||| | | |||||||||||| |||| |||||| |
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| T |
25501227 |
acaacatggttaattaacgatgtatcactgatccattattggtattatgcatctaactttagttaaccatgtccgattaatatgttgggacatgtttctt |
25501326 |
T |
|
| Q |
368 |
gtataattaattgtttcaatttggtctctccctgtactta |
407 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
25501327 |
gtataattaactgtttcaatttggcctctccctgtactta |
25501366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 25642470 - 25642509
Alignment:
| Q |
91 |
agccaaggggaaagaaactgatctctttaatcttggcctt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25642470 |
agccaaggggaaagaaactgatctctttaatcttggcctt |
25642509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 25450015 - 25450055
Alignment:
| Q |
90 |
aagccaaggggaaagaaactgatctctttaatcttggcctt |
130 |
Q |
| |
|
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|
| T |
25450015 |
aagccaaggggaaggaaactgatctctttaatcttggcctt |
25450055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 25450102 - 25450155
Alignment:
| Q |
192 |
ggtaattatcttcttaaacatgatatg--acaatattaattgaaaattatttac |
243 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
25450102 |
ggtaattatgttcttaaacatgatatgccacaatattaattgaaaactatttac |
25450155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 25429355 - 25429385
Alignment:
| Q |
191 |
aggtaattatcttcttaaacatgatatgaca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
25429355 |
aggtaattatcttcttaaacatgatatgaca |
25429385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 25473881 - 25473844
Alignment:
| Q |
93 |
ccaaggggaaagaaactgatctctttaatcttggcctt |
130 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
25473881 |
ccaagggaaaagaaaccgatctctttaatcttggcctt |
25473844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 26173784 - 26173823
Alignment:
| Q |
411 |
tacaacaaaaatgagatttagtaacatttgaaaaatatta |
450 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||| |
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| T |
26173784 |
tacaacaaaaatgagatttagtaacacttaaaaaatatta |
26173823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 9438823 - 9438791
Alignment:
| Q |
414 |
aacaaaaatgagatttagtaacatttgaaaaat |
446 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
9438823 |
aacaaaaatgagatttagtaacacttgaaaaat |
9438791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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