View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296_low_7 (Length: 536)

Name: NF1296_low_7
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296_low_7
NF1296_low_7
[»] chr8 (19 HSPs)
chr8 (131-273)||(17973565-17973707)
chr8 (130-268)||(39837490-39837628)
chr8 (131-268)||(25579740-25579877)
chr8 (131-268)||(30938282-30938419)
chr8 (131-260)||(39845541-39845670)
chr8 (130-268)||(17664568-17664706)
chr8 (131-268)||(1407001-1407138)
chr8 (131-263)||(4839715-4839847)
chr8 (131-268)||(17683724-17683861)
chr8 (130-259)||(26873541-26873670)
chr8 (131-259)||(26875991-26876119)
chr8 (130-233)||(4582203-4582306)
chr8 (130-192)||(6670710-6670772)
chr8 (1-56)||(22894999-22895054)
chr8 (1-46)||(16052744-16052789)
chr8 (131-188)||(6663042-6663099)
chr8 (131-188)||(6743444-6743501)
chr8 (201-257)||(23090611-23090667)
chr8 (201-257)||(25700273-25700329)
[»] chr4 (15 HSPs)
chr4 (130-268)||(12996475-12996613)
chr4 (129-259)||(52295602-52295732)
chr4 (131-268)||(27343619-27343756)
chr4 (130-268)||(8094210-8094348)
chr4 (131-268)||(8103016-8103153)
chr4 (131-268)||(4523608-4523745)
chr4 (131-268)||(21532233-21532369)
chr4 (131-256)||(12428418-12428543)
chr4 (131-204)||(10638328-10638400)
chr4 (130-225)||(33188765-33188859)
chr4 (131-256)||(3424331-3424454)
chr4 (186-235)||(12402907-12402956)
chr4 (1-59)||(15787869-15787927)
chr4 (182-254)||(19772241-19772313)
chr4 (201-254)||(19647352-19647405)
[»] scaffold0002 (1 HSPs)
scaffold0002 (131-268)||(121228-121365)
[»] chr6 (25 HSPs)
chr6 (1-131)||(15576558-15576688)
chr6 (133-268)||(25991852-25991987)
chr6 (131-268)||(25550295-25550432)
chr6 (131-259)||(23925335-23925463)
chr6 (131-273)||(13825703-13825845)
chr6 (131-268)||(5004061-5004198)
chr6 (130-286)||(5994698-5994855)
chr6 (131-268)||(30824457-30824594)
chr6 (131-268)||(25506469-25506606)
chr6 (131-262)||(35091610-35091741)
chr6 (130-268)||(33298084-33298221)
chr6 (131-268)||(11279837-11279974)
chr6 (130-260)||(15391547-15391677)
chr6 (129-235)||(13490191-13490297)
chr6 (131-183)||(5489132-5489184)
chr6 (1-127)||(15574462-15574591)
chr6 (130-192)||(11053701-11053764)
chr6 (190-258)||(26526640-26526708)
chr6 (131-192)||(30114444-30114505)
chr6 (73-127)||(17860886-17860940)
chr6 (1-56)||(16526925-16526980)
chr6 (399-466)||(20532403-20532470)
chr6 (201-254)||(15140726-15140779)
chr6 (201-254)||(23985047-23985100)
chr6 (201-254)||(28127457-28127510)
[»] scaffold0016 (1 HSPs)
scaffold0016 (130-286)||(23463-23620)
[»] chr3 (31 HSPs)
chr3 (131-268)||(50824352-50824489)
chr3 (131-268)||(50851371-50851508)
chr3 (130-268)||(8154572-8154710)
chr3 (130-286)||(14538514-14538671)
chr3 (130-259)||(27341272-27341401)
chr3 (130-268)||(41006555-41006693)
chr3 (130-268)||(41015335-41015473)
chr3 (130-273)||(9525357-9525500)
chr3 (131-273)||(9555031-9555173)
chr3 (131-268)||(2211239-2211376)
chr3 (130-256)||(17933654-17933780)
chr3 (131-268)||(28470146-28470282)
chr3 (133-257)||(43470492-43470615)
chr3 (130-256)||(17919198-17919324)
chr3 (131-195)||(17628265-17628329)
chr3 (130-256)||(16816145-16816269)
chr3 (131-257)||(21186747-21186872)
chr3 (135-233)||(18349560-18349658)
chr3 (130-233)||(8197659-8197762)
chr3 (131-227)||(30445-30541)
chr3 (131-225)||(18039011-18039105)
chr3 (1-56)||(11520733-11520788)
chr3 (201-254)||(13272670-13272723)
chr3 (201-254)||(4505979-4506032)
chr3 (216-257)||(16288692-16288733)
chr3 (201-254)||(17657630-17657683)
chr3 (201-254)||(27976552-27976605)
chr3 (200-256)||(1477758-1477814)
chr3 (130-158)||(6958978-6959006)
chr3 (75-127)||(11520659-11520711)
chr3 (210-254)||(17618130-17618174)
[»] scaffold0156 (1 HSPs)
scaffold0156 (131-273)||(35279-35421)
[»] chr7 (16 HSPs)
chr7 (130-268)||(10439936-10440074)
chr7 (131-262)||(18304326-18304457)
chr7 (131-268)||(12978455-12978592)
chr7 (130-268)||(4952325-4952463)
chr7 (130-268)||(13831499-13831637)
chr7 (130-268)||(13839530-13839668)
chr7 (131-227)||(30244775-30244871)
chr7 (130-192)||(4941581-4941643)
chr7 (130-256)||(21662962-21663089)
chr7 (131-235)||(30245568-30245672)
chr7 (139-235)||(30255420-30255516)
chr7 (1-56)||(21471390-21471445)
chr7 (1-127)||(5721920-5722050)
chr7 (202-257)||(1955691-1955746)
chr7 (201-254)||(20114066-20114119)
chr7 (201-254)||(38247996-38248049)
[»] chr5 (31 HSPs)
chr5 (130-268)||(20372841-20372979)
chr5 (131-268)||(20398563-20398700)
chr5 (130-268)||(24956774-24956912)
chr5 (130-268)||(24965237-24965375)
chr5 (131-268)||(29186206-29186343)
chr5 (131-268)||(43597974-43598111)
chr5 (131-268)||(43603466-43603603)
chr5 (131-268)||(43608958-43609095)
chr5 (128-268)||(1728087-1728227)
chr5 (130-286)||(23349986-23350142)
chr5 (130-268)||(28852549-28852687)
chr5 (131-268)||(28843940-28844077)
chr5 (131-263)||(31410890-31411022)
chr5 (131-258)||(31421789-31421916)
chr5 (131-242)||(19223555-19223666)
chr5 (134-227)||(41099745-41099838)
chr5 (210-256)||(23028007-23028053)
chr5 (209-255)||(23037923-23037969)
chr5 (1-127)||(17027056-17027184)
chr5 (5-46)||(24841367-24841408)
chr5 (131-180)||(21929236-21929285)
chr5 (201-254)||(21988620-21988673)
chr5 (201-254)||(21997264-21997317)
chr5 (201-254)||(23606368-23606421)
chr5 (201-254)||(23635076-23635129)
chr5 (201-254)||(23829022-23829075)
chr5 (201-254)||(23837763-23837816)
chr5 (201-254)||(31550458-31550511)
chr5 (4-56)||(11274819-11274871)
chr5 (201-257)||(21852579-21852635)
chr5 (201-257)||(21869103-21869159)
[»] scaffold0111 (1 HSPs)
scaffold0111 (131-268)||(33035-33172)
[»] scaffold0083 (1 HSPs)
scaffold0083 (131-259)||(15813-15941)
[»] scaffold0497 (1 HSPs)
scaffold0497 (131-257)||(10993-11119)
[»] chr2 (29 HSPs)
chr2 (130-268)||(15944485-15944623)
chr2 (130-268)||(35138592-35138730)
chr2 (130-268)||(35146928-35147066)
chr2 (130-268)||(41233772-41233910)
chr2 (131-268)||(14582925-14583062)
chr2 (131-268)||(15953000-15953137)
chr2 (131-268)||(38168285-38168422)
chr2 (130-268)||(20621517-20621655)
chr2 (130-268)||(42565857-42565995)
chr2 (131-268)||(42574481-42574618)
chr2 (131-233)||(17687361-17687463)
chr2 (159-286)||(35037884-35038011)
chr2 (131-259)||(20372251-20372378)
chr2 (131-242)||(25483601-25483712)
chr2 (131-242)||(25491207-25491318)
chr2 (131-226)||(44372705-44372800)
chr2 (131-226)||(44388616-44388711)
chr2 (131-256)||(35303737-35303862)
chr2 (131-235)||(27606606-27606709)
chr2 (131-233)||(24285696-24285798)
chr2 (131-233)||(42249418-42249520)
chr2 (133-233)||(26903296-26903396)
chr2 (131-233)||(34070567-34070669)
chr2 (130-233)||(24292371-24292475)
chr2 (180-257)||(18989312-18989389)
chr2 (131-192)||(21322814-21322875)
chr2 (131-181)||(20917520-20917570)
chr2 (201-254)||(27683381-27683434)
chr2 (399-431)||(20372078-20372110)
[»] chr1 (22 HSPs)
chr1 (130-268)||(3432818-3432956)
chr1 (130-268)||(31548522-31548660)
chr1 (131-268)||(31539954-31540091)
chr1 (131-268)||(35103992-35104129)
chr1 (131-286)||(41746602-41746758)
chr1 (131-286)||(32137664-32137819)
chr1 (130-256)||(29221429-29221554)
chr1 (131-256)||(44320132-44320257)
chr1 (131-233)||(21498861-21498963)
chr1 (133-225)||(51058359-51058450)
chr1 (1-56)||(23223131-23223186)
chr1 (133-248)||(28457556-28457673)
chr1 (207-256)||(8241438-8241487)
chr1 (394-432)||(28457826-28457864)
chr1 (182-254)||(8579341-8579413)
chr1 (131-165)||(20314058-20314092)
chr1 (1-47)||(31313020-31313066)
chr1 (201-254)||(12465698-12465751)
chr1 (12-49)||(31313124-31313161)
chr1 (131-192)||(52100017-52100078)
chr1 (399-431)||(23950396-23950428)
chr1 (399-431)||(28993305-28993337)
[»] scaffold0209 (1 HSPs)
scaffold0209 (131-268)||(12-149)
[»] scaffold0632 (1 HSPs)
scaffold0632 (131-259)||(4390-4518)
[»] scaffold0173 (1 HSPs)
scaffold0173 (130-286)||(839-995)
[»] scaffold0039 (1 HSPs)
scaffold0039 (131-222)||(40807-40898)
[»] scaffold0170 (1 HSPs)
scaffold0170 (131-257)||(7129-7255)
[»] scaffold0431 (1 HSPs)
scaffold0431 (131-256)||(139-264)
[»] scaffold0222 (1 HSPs)
scaffold0222 (131-256)||(20422-20547)
[»] scaffold0863 (1 HSPs)
scaffold0863 (130-233)||(335-438)
[»] scaffold0991 (1 HSPs)
scaffold0991 (131-224)||(345-438)
[»] scaffold0048 (1 HSPs)
scaffold0048 (131-203)||(7622-7694)
[»] scaffold0015 (1 HSPs)
scaffold0015 (129-225)||(192526-192622)
[»] scaffold0044 (2 HSPs)
scaffold0044 (130-233)||(65501-65604)
scaffold0044 (130-233)||(81749-81852)
[»] scaffold0389 (1 HSPs)
scaffold0389 (130-233)||(415-518)
[»] scaffold0290 (1 HSPs)
scaffold0290 (180-257)||(15760-15837)
[»] scaffold1487 (1 HSPs)
scaffold1487 (138-177)||(762-801)
[»] scaffold0514 (1 HSPs)
scaffold0514 (130-192)||(10912-10974)
[»] scaffold0315 (1 HSPs)
scaffold0315 (201-257)||(10595-10651)
[»] scaffold0990 (1 HSPs)
scaffold0990 (14-56)||(3085-3127)
[»] scaffold0484 (1 HSPs)
scaffold0484 (131-180)||(11457-11507)
[»] scaffold0027 (1 HSPs)
scaffold0027 (130-164)||(65710-65744)
[»] scaffold0455 (1 HSPs)
scaffold0455 (201-254)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (201-254)||(59736-59789)
[»] scaffold0007 (1 HSPs)
scaffold0007 (131-257)||(61288-61418)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 17973565 - 17973707
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  231 agaggatactttgaagtaactcattttttattcggagttgggc 273  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||    
T  17973665 agaggttactttgaagtacctcattttttattccgagtcgggc 17973707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 39837628 - 39837490
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  39837628 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39837529  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  39837528 aagaggttactttgaagtacctcattttttattccgagt 39837490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 25579877 - 25579740
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  25579777 agaggttactttgaagtacctcattttttattccgagt 25579740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 30938282 - 30938419
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagt 30938419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 39845670 - 39845541
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  39845670 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39845571  T
Q  231 agaggatactttgaagtaactcatttttta 260  Q
    ||||| |||||||||||| |||||||||||    
T  39845570 agaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 17664706 - 17664568
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |    
T  17664706 ctgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgaca 17664607  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||| | |||||||||||| |||||||||||||| ||||    
T  17664606 aagaagttactttgaagtacctcattttttattccgagt 17664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 1407138 - 1407001
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagt 1407001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 131 - 263
Target Start/End: Complemental strand, 4839847 - 4839715
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  4839847 tgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 4839748  T
Q  231 agaggatactttgaagtaactcattttttattc 263  Q
    ||| | |||||||||||| ||||||||| ||||    
T  4839747 agaagttactttgaagtacctcatttttgattc 4839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 17683861 - 17683724
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |  |     
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||| | |||||||||||| |||||||||||||| ||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagt 17683724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 26873670 - 26873541
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||  |    
T  26873670 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgaca 26873571  T
Q  230 gagaggatactttgaagtaactcatttttt 259  Q
     ||||| |||||| ||||| || |||||||    
T  26873570 aagaggttactttaaagtaccttatttttt 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 26876119 - 26875991
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||  |     
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  231 agaggatactttgaagtaactcatttttt 259  Q
    ||||| |||||| || || ||||||||||    
T  26876019 agaggttactttaaaatacctcatttttt 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 4582203 - 4582306
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||  |||||||||||||||||||||||| |||| |||||| ||| || |||||||  ||| ||| | | || ||| |||||||||||||| |    
T  4582203 ctgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttcggca 4582302  T
Q  230 gaga 233  Q
    ||||    
T  4582303 gaga 4582306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 6670710 - 6670772
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 192  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  6670710 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 6670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22894999 - 22895054
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||| ||| |||||||    
T  22894999 ttgtacctttctatgagattgaagccattctaaacagacattcagggtatatatca 22895054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16052744 - 16052789
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaag 46  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||    
T  16052744 ttgtaccttgctatgagattgaagcaattcgaaacagacattcaag 16052789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 6663042 - 6663099
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 188  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6663042 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6663099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 6743444 - 6743501
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttt 188  Q
    |||||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||||    
T  6743444 tgtcataccccaaattttaaccactttt-tctatttttaccaaattttattcgtatttt 6743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 23090611 - 23090667
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||| ||| ||||||||||| |  |||||||||||||||||||| ||||||||    
T  23090611 ttttaatcattttagacgaaatttggacagagaggatactttgaagtacctcatttt 23090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 25700273 - 25700329
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  25700273 ttttaatcatttcaaacgaaatttcggaagggaggttactttgaagtacctcatttt 25700329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 12996475 - 12996613
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12996475 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggta 12996574  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
    |||||| |||||||||||| |||||||||||||| ||||    
T  12996575 gagaggttactttgaagtacctcattttttattccgagt 12996613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 52295602 - 52295732
Alignment:
Q  129 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  52295602 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggc 52295701  T
Q  229 agagaggatactttgaagtaactcatttttt 259  Q
    ||||||  |||||||||||| ||||||||||    
T  52295702 agagagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 27343756 - 27343619
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||    
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagt 27343619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8094348 - 8094210
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |    
T  8094348 ctgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 8094249  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| ||||||||| |||| ||||    
T  8094248 aagaggttactttgaagtacctcatttttgattccgagt 8094210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 8103153 - 8103016
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| ||||||||| |||| ||||    
T  8103053 agaggttactttgaagtacctcatttttgattccgagt 8103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 4523745 - 4523608
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |     
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagt 4523608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 21532369 - 21532233
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 21532271  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    | ||  |||||||||||| |||||||||||||| ||||    
T  21532270 aaagattactttgaagtacctcattttttattctgagt 21532233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  231 agaggatactttgaagtaactcattt 256  Q
    ||||  |||||||||||| |||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaatttt 204  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 33188765 - 33188859
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 225  Q
    |||||||||||||||||||||| |||||| |||||| ||| || ||||||| ||||||||||||  | |||||||| |||||||||||||||||||    
T  33188765 ctgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttc 33188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||| || ||||||||| | |||||| |||||||| || ||| |||| |  |||  ||| ||||| |||||||||||||||       
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcgg--c 3424428  T
Q  231 agaggatactttgaagtaactcattt 256  Q
    ||||| |||||||||||| |||||||    
T  3424429 agaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 12402907 - 12402956
Alignment:
Q  186 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 235  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagagagg 12402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15787869 - 15787927
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcacca 59  Q
    ||||||||| ||||||||||||| ||||| |||||||||||| || |||||||| ||||    
T  15787869 ttgtaccttgctatgagattgaatcaattttaaatagacatttaaagtctatattacca 15787927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 19772241 - 19772313
Alignment:
Q  182 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19772241 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 19647405 - 19647352
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19647405 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19647352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 121228 - 121365
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| ||||||||||||| |||||||| |||| ||||    
T  121328 agaggttactttgaagtaaatcatttttgattccgagt 121365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 15576558 - 15576688
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacgccgaaggcattttcaaggttatcacgtggttgagg 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  15576558 ttgtaccttactatgagattgaagcaattcgaaatagacattcaaggtctatatcaccatacacactggaggcattttcaaggttatcacgtggttgagg 15576657  T
Q  101 ttaaggtggggtatatttgagaaagtatgct 131  Q
    |||||||||||||||||||||||||||||||    
T  15576658 ttaaggtggggtatatttgagaaagtatgct 15576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 25991852 - 25991987
Alignment:
Q  133 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 232  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  233 aggatactttgaagtaactcattttttattcggagt 268  Q
    ||| |||||||||||| |||||||||||||| ||||    
T  25991952 aggttactttgaagtacctcattttttattcagagt 25991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 25550295 - 25550432
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| || ||    
T  25550295 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcag 25550394  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  25550395 agaggttactttgaagtacctcattttttattccgagt 25550432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 23925335 - 23925463
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  231 agaggatactttgaagtaactcatttttt 259  Q
    ||| | |||||||||||| ||||||||||    
T  23925435 agatgttactttgaagtacctcatttttt 23925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 131 - 273
Target Start/End: Original strand, 13825703 - 13825845
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||    
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  231 agaggatactttgaagtaactcattttttattcggagttgggc 273  Q
    ||||| |||||||||||| ||||||||| |||| |||| ||||    
T  13825803 agaggttactttgaagtacctcatttttgattccgagtcgggc 13825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 5004061 - 5004198
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  5004061 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 5004160  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  5004161 ggaggttactttgaagtacctcatttttgattccgagt 5004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 5994698 - 5994855
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || |    
T  5994698 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggca 5994797  T
Q  230 gagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctctt 286  Q
     ||||| |||||||||||| |||||||||| |||| |||| |||| || |||||||||    
T  5994798 aagaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctt 5994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 30824594 - 30824457
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |     
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| ||||||||| |||| ||||    
T  30824494 agaggttactttgaagtacctcatttttgattccgagt 30824457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 25506606 - 25506469
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||    
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||| || || ||||||||| |||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagt 25506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 35091741 - 35091610
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || |     
T  35091741 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 35091642  T
Q  231 agaggatactttgaagtaactcattttttatt 262  Q
     |||| |||||||||||| |||||||||||||    
T  35091641 ggaggttactttgaagtacctcattttttatt 35091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 33298084 - 33298221
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  33298084 ctgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 33298183  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||| | |||||||||||| |||||||||||||| ||||    
T  33298184 aaga-gttactttgaagtacctcattttttattccgagt 33298221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 11279837 - 11279974
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagt 11279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 15391677 - 15391547
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||  |    
T  15391677 ctgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgaca 15391578  T
Q  230 gagaggatactttgaagtaactcatttttta 260  Q
     ||||| |||||||||||| |||||||||||    
T  15391577 aagaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 13490191 - 13490297
Alignment:
Q  129 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 228  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||  ||||||||||| |  |||||||| |||| ||||     
T  13490191 gctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaatctcggc 13490290  T
Q  229 agagagg 235  Q
    |||||||    
T  13490291 agagagg 13490297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 5489184 - 5489132
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 15574591 - 15574462
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacgccga---aggcattttcaaggttatcacgtggttg 97  Q
    ||||| ||| ||||||||||||||||||| || ||||||||||||||| |||||||  |||||| |  |   |||  ||||||||||||| |||||| ||    
T  15574591 ttgtatcttgctatgagattgaagcaattatacatagacattcaaggtttatatcattatacacacatatagaggacttttcaaggttataacgtggctg 15574492  T
Q  98 aggttaaggtggggtatatttgagaaagta 127  Q
    ||||||||||||| |||||||| |||||||    
T  15574491 aggttaaggtgggatatatttgggaaagta 15574462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 11053701 - 11053764
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 192  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  11053701 ctgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa 11053764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 26526708 - 26526640
Alignment:
Q  190 aaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 258  Q
    |||||||||||||||| |||||||||||||||| |||| |||| || ||||||||| || |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcattttt 26526640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 30114444 - 30114505
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 192  Q
    |||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  30114444 tgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 30114505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 17860886 - 17860940
Alignment:
Q  73 cattttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 127  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||| ||||||    
T  17860886 cattttcaaggttataacgtgactgaggttaaggtgggatatatttgaaaaagta 17860940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16526980 - 16526925
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||| |||| | ||| ||||||||||||| ||||||||||||| |||||||    
T  16526980 ttgtacctttctataacattaaagcaattctaaacagacattcaaggtatatatca 16526925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 466
Target Start/End: Complemental strand, 20532470 - 20532403
Alignment:
Q  399 gtcaatgagtccgaaaatttcagcaagggtccaatttcnnnnnnnncatttcttctccgtacgccaca 466  Q
    |||||| |||||||||||||||||||||||||| |||         ||||||||||||||||||||||    
T  20532470 gtcaataagtccgaaaatttcagcaagggtccatttttctttttttcatttcttctccgtacgccaca 20532403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 15140726 - 15140779
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  15140726 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 23985100 - 23985047
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23985100 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 28127510 - 28127457
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  28127510 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 28127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 23463 - 23620
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttt-taaagtcgggaattttcatcgtttcagacgaaatttcggt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  23463 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggt 23562  T
Q  229 agagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
    ||||||| |||||||||||| ||||||||| |||| |||| |||| || |||||||||    
T  23563 agagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctt 23620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 50824352 - 50824489
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50824352 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50824451  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  50824452 agaggttactttgaagtacctcattttttattccgagt 50824489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 50851508 - 50851371
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  50851508 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 50851409  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  50851408 agaggttactttgaagtacctcattttttattccgagt 50851371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8154710 - 8154572
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  8154710 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 8154611  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  8154610 aagaggttactttgaagtacctcattttttattccgagt 8154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 14538671 - 14538514
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-t 228  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||      
T  14538671 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 14538572  T
Q  229 agagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
    | ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  14538571 aaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 14538514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 27341401 - 27341272
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |    
T  27341401 ctgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 27341302  T
Q  230 gagaggatactttgaagtaactcatttttt 259  Q
    || ||| |||||||||||| ||||||||||    
T  27341301 gaaaggttactttgaagtacctcatttttt 27341272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 41006555 - 41006693
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41006555 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41006654  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41006655 aggaggttactttgaagtacctcatttttgattccgagt 41006693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 41015335 - 41015473
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41015335 ctgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41015434  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41015435 aggaggttactttgaagtacctcatttttgattccgagt 41015473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 130 - 273
Target Start/End: Complemental strand, 9525500 - 9525357
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |    
T  9525500 ctgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggca 9525401  T
Q  230 gagaggatactttgaagtaactcattttttattcggagttgggc 273  Q
    || ||| |||||| || || |||||||||||||| |||| ||||    
T  9525400 gaaaggttactttaaaatacctcattttttattccgagtcgggc 9525357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 9555173 - 9555031
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||| ||    
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  231 agaggatactttgaagtaactcattttttattcggagttgggc 273  Q
    | ||| |||||| || || |||||||||||||| |||| ||||    
T  9555073 aaaggttactttaaaatacctcattttttattccgagtcgggc 9555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 2211239 - 2211376
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |     
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| || ||| || || |||||||||||||| ||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagt 2211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 17933654 - 17933780
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||||        
T  17933654 ctgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcg 17933753  T
Q  230 gagaggatactttgaagtaactcattt 256  Q
    |||||| |||||||||||| |||||||    
T  17933754 gagaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 28470282 - 28470146
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||  |     
T  28470282 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca- 28470184  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    | ||  |||| ||||||| |||||||||||||| ||||    
T  28470183 aaagattactatgaagtacctcattttttattctgagt 28470146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  133 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 232  Q
    ||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| || |||||||  ||||||||||||||||||||| ||||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  233 aggatactttgaagtaactcatttt 257  Q
    ||| |||||||||||| ||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 17919198 - 17919324
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| |  |||||||||||||||||       
T  17919198 ctgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcg 17919297  T
Q  230 gagaggatactttgaagtaactcattt 256  Q
    |||||| |||||| ||||| |||||||    
T  17919298 gagaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 16816269 - 16816145
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||| |  ||||||||||||||| |       
T  16816269 ctgtcataccc-aaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacg 16816171  T
Q  230 gagaggatactttgaagtaactcattt 256  Q
    |||||| |||||||||||| |||||||    
T  16816170 gagagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 21186747 - 21186872
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||| ||| || ||| |||||||||||||| |||||||| || |||||||| | |||||| |||||||||||| ||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttcggcag 21186846  T
Q  231 agaggatactttgaagtaactcatttt 257  Q
     |||| || |||||| || ||||||||    
T  21186847 ggagg-tattttgaaatacctcatttt 21186872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 18349560 - 18349658
Alignment:
Q  135 ataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagaga 233  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||||| |||| ||| | | |||||| |||||||||||||| |||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttcggcagaga 18349658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 8197762 - 8197659
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| |    
T  8197762 ctgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttcggca 8197663  T
Q  230 gaga 233  Q
    ||||    
T  8197662 gaga 8197659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 30541 - 30445
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 227  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 30445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 18039011 - 18039105
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 225  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || | |||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttc 18039105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11520788 - 11520733
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||| ||||||||||||||||||| |||  ||||||||||||| |||||||    
T  11520788 ttgtaccttgctatgagattgaagcaattataagcagacattcaaggtatatatca 11520733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 13272670 - 13272723
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  13272670 ttttaatcatttcagacaaaatttcggcagagaggatactttgaagtacctcat 13272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 4506032 - 4505979
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  4506032 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 4505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  216 acgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 17657630 - 17657683
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17657630 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 17657683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 27976552 - 27976605
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27976552 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 1477758 - 1477814
Alignment:
Q  200 attttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 256  Q
    ||||| ||| |||||||| ||||||||| || |||| |||||||||||| |||||||    
T  1477758 atttttatcatttcagacaaaatttcggcagggaggttactttgaagtacctcattt 1477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 6959006 - 6958978
Alignment:
Q  130 ctgtcataccccaaattttgaccactttt 158  Q
    |||||||||||||||||||||||||||||    
T  6959006 ctgtcataccccaaattttgaccactttt 6958978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 11520711 - 11520659
Alignment:
Q  75 ttttcaaggttatcacgtggttgaggttaaggtggggtatatttgagaaagta 127  Q
    ||||||||||||| |||||| |||||| |||||||| |||||||  |||||||    
T  11520711 ttttcaaggttataacgtggatgaggtaaaggtgggatatatttaggaaagta 11520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 17618174 - 17618130
Alignment:
Q  210 tttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17618174 tttcagacaaaatttcggcagggaggatactttgaagtacctcat 17618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 131 - 273
Target Start/End: Complemental strand, 35421 - 35279
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  231 agaggatactttgaagtaactcattttttattcggagttgggc 273  Q
    ||||| |||||||||||| |||||||||||||| |||| ||||    
T  35321 agaggttactttgaagtacctcattttttattccgagtcgggc 35279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 9e-56; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 10439936 - 10440074
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  10439936 ctgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggca 10440035  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
    |||||| |||||| ||||| |||||||||||||| ||||    
T  10440036 gagaggttactttaaagtacctcattttttattccgagt 10440074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 18304457 - 18304326
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  231 agaggatactttgaagtaactcattttttatt 262  Q
    ||||| |||||||||||| |||||||||||||    
T  18304357 agaggttactttgaagtacctcattttttatt 18304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 12978455 - 12978592
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagt 12978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 4952463 - 4952325
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |    
T  4952463 ctgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 4952364  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  4952363 aagaggttactttgaagtacctcattttttattccgagt 4952325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 13831499 - 13831637
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13831499 ctgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13831598  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  13831599 aagaggttactttgaagtacctcattttttattccgagt 13831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 13839530 - 13839668
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  13839530 ctgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 13839629  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  13839630 aagaggttactttgaagtacctcattttttattccgagt 13839668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 30244775 - 30244871
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 227  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||||| || ||||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttcgg 30244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 4941643 - 4941581
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4941643 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 21663089 - 21662962
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtat-ttttaaagtcgggaattttcatcgtttcagacgaaatttcggt 228  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||| |||||||| || || | ||| |||||| ||||||||||||       
T  21663089 ctgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaac 21662990  T
Q  229 agagaggatactttgaagtaactcattt 256  Q
    || |||| |||||||||||| |||||||    
T  21662989 agggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 30245568 - 30245672
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| ||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggaag 30245667  T
Q  231 agagg 235  Q
    |||||    
T  30245668 agagg 30245672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 30255420 - 30255516
Alignment:
Q  139 cccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 235  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| | ||||||| | ||||||| || |||||||| |||||||    
T  30255420 cccaaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttcggcagagagg 30255516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21471445 - 21471390
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| || |||||||    
T  21471445 ttgtaccttgctatgagattgaagcaattctaaatagacattcaatgtatatatca 21471390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5722050 - 5721920
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacgccga---aggcattttcaaggttatcacgtggttg 97  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||   |||| |||| |||| |  |   |||  ||||||||||||| |||||| |     
T  5722050 ttgtatcttgctatgagattgaagcaattctaaataggcattcaaggcacatattaccagacacacatatagaggttttttcaaggttataacgtggctt 5721951  T
Q  98 aggtt-aaggtggggtatatttgagaaagta 127  Q
    ||||| |||||||| ||||||| ||||||||    
T  5721950 aggttaaaggtgggatatattttagaaagta 5721920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  202 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 20114119 - 20114066
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  20114119 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 20114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 38247996 - 38248049
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  38247996 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 38248049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 20372979 - 20372841
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |    
T  20372979 ctgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20372880  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
    |||||| |||||||||||| |||||||||||||| ||||    
T  20372879 gagaggttactttgaagtacctcattttttattccgagt 20372841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 20398700 - 20398563
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||    
T  20398700 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20398601  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  20398600 agaggttactttgaagtacctcattttttattccgagt 20398563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 24956912 - 24956774
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24956912 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24956813  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  24956812 aggaggttactttgaagtacctcatttttgattccgagt 24956774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 24965375 - 24965237
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  24965375 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 24965276  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  24965275 aggaggttactttgaagtacctcatttttgattccgagt 24965237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 29186343 - 29186206
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |     
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||  |||||||||||||| ||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagt 29186206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 43598111 - 43597974
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43598111 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43598012  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43598011 agaggttactttgaagtacctcattttttattccgagt 43597974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 43603603 - 43603466
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43603603 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43603504  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43603503 agaggttactttgaagtacctcattttttattccgagt 43603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 43609095 - 43608958
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| || |     
T  43609095 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaa 43608996  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  43608995 agaggttactttgaagtacctcattttttattccgagt 43608958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 1728227 - 1728087
Alignment:
Q  128 tgctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 227  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |     
T  1728227 tgctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttga 1728128  T
Q  228 tagagaggatactttgaagtaactcattttttattcggagt 268  Q
     | ||||| |||||||||||| |||||||||||||| ||||    
T  1728127 caaagaggttactttgaagtacctcattttttattccgagt 1728087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 23350142 - 23349986
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |    
T  23350142 ctgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggca 23350043  T
Q  230 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
     ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  23350042 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 23349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 28852549 - 28852687
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  28852549 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28852648  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  28852649 aagaggttactttgaagtacctcattttttattccgagt 28852687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 28843940 - 28844077
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  28843940 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28844039  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  28844040 agaggttactttgaagtacctcattttttattccgagt 28844077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 131 - 263
Target Start/End: Original strand, 31410890 - 31411022
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||| | |||||||||||  |     
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  231 agaggatactttgaagtaactcattttttattc 263  Q
    ||||| |||||||||||| ||||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||  |     
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  231 agaggatactttgaagtaactcattttt 258  Q
    ||| | |||||||||||| |||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| || |||||||||| ||||| |||  ||    
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  231 agaggatacttt 242  Q
    ||||| ||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 41099838 - 41099745
Alignment:
Q  134 cataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg 227  Q
    ||||||||||||||||||||||||| |||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| ||||||||||||||    
T  41099838 cataccccaaattttgaccacttttatctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcgg 41099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  210 tttcagacgaaatttcggtagagaggatactttgaagtaactcattt 256  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  209 gtttcagacgaaatttcggtagagaggatactttgaagtaactcatt 255  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17027184 - 17027056
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatcaccatacacgccga--aggcattttcaaggttatcacgtggttga 98  Q
    |||| |||| |||||| ||| |||||||| |||| ||||| ||||||| | ||||| || |||| |  |  |||| |||| |||||||| || || ||||    
T  17027184 ttgttccttcctatgacatttaagcaattataaacagacactcaaggtatttatcatcacacacacatataaggccttttaaaggttataacatgattga 17027085  T
Q  99 ggttaaggtggggtatatttgagaaagta 127  Q
    |||||||||||| || |||||||||||||    
T  17027084 ggttaaggtgggatacatttgagaaagta 17027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 24841408 - 24841367
Alignment:
Q  5 accttactatgagattgaagcaattctaaatagacattcaag 46  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  24841408 accttactatgagattgaagcaattctaaacaaacattcaag 24841367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 21929236 - 21929285
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttatt 180  Q
    ||||||||||||||||||||| | |||||||  || ||||||||||||||    
T  21929236 tgtcataccccaaattttgacaatttttctcgctttttacccattttatt 21929285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 21988673 - 21988620
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21988673 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 21997317 - 21997264
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21997317 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21997264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 23606421 - 23606368
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23606421 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 23635076 - 23635129
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23635076 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 23829075 - 23829022
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23829075 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 23837816 - 23837763
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23837816 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 31550511 - 31550458
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| ||||| |||||||||||||| |||||    
T  31550511 ttttaatcatttcagacaaaatttcggcagagatgatactttgaagtacctcat 31550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 11274819 - 11274871
Alignment:
Q  4 taccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||||||| |||||||| |||| ||| | ||||||||||| |||||||    
T  11274819 taccttactatgaaattgaagcgattccaaacaaacattcaaggtatatatca 11274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 21852635 - 21852579
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21852635 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 21869159 - 21869103
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21869159 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 33035 - 33172
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |     
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||| ||||| |||||||||||||| ||||    
T  33135 agaggttactttaaagtacctcattttttattccgagt 33172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  231 agaggatactttgaagtaactcatttttt 259  Q
    ||||| |||||||||||| ||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 10993 - 11119
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||| ||    
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  231 agaggatactttgaagtaactcatttt 257  Q
    ||||| |||||||||||| ||||||||    
T  11093 agaggttactttgaagtacctcatttt 11119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 15944623 - 15944485
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  15944623 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 15944524  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  15944523 aggaggttactttgaagtacctcatttttgattccgagt 15944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 35138592 - 35138730
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35138592 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35138691  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  35138692 aggaggttactttgaagtacctcatttttgattccgagt 35138730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 35146928 - 35147066
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  35146928 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 35147027  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  35147028 aggaggttactttgaagtacctcatttttgattccgagt 35147066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 41233910 - 41233772
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  41233910 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 41233811  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  41233810 aggaggttactttgaagtacctcatttttgattccgagt 41233772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 14582925 - 14583062
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagt 14583062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 15953137 - 15953000
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagt 15953000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 38168422 - 38168285
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagt 38168285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 20621517 - 20621655
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||  |    
T  20621517 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgaca 20621616  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||| | |||||||||||| |||||||||||||| ||||    
T  20621617 aagatgttactttgaagtacctcattttttattctgagt 20621655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 42565995 - 42565857
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |    
T  42565995 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 42565896  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  42565895 aagaggttactttgaagtacctcattttttattccgagt 42565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 42574618 - 42574481
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagt 42574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 17687463 - 17687361
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17687364  T
Q  231 aga 233  Q
    |||    
T  17687363 aga 17687361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 35037884 - 35038011
Alignment:
Q  159 ctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  259 tattcggagttgggctctgttccctctt 286  Q
    ||||| ||||  ||| || |||||||||    
T  35037984 tattccgagtcaggccctcttccctctt 35038011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 20372378 - 20372251
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |     
T  20372378 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca- 20372280  T
Q  231 agaggatactttgaagtaactcatttttt 259  Q
    | ||| |||||||||||| ||||||||||    
T  20372279 aaaggttactttgaagtacctcatttttt 20372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  231 agaggatacttt 242  Q
    ||||| ||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||  ||    
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  231 agaggatacttt 242  Q
    ||||| ||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 44372705 - 44372800
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 226  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 44388616 - 44388711
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 226  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||| | ||||||||  | |||||| |||||||| |||||| |||| |  ||| |||| ||||||||||||||||||||| ||    
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  231 agaggatactttgaagtaactcattt 256  Q
    ||||| || ||||||||| |||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 27606709 - 27606606
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||| |||||||||||| ||||||||||||| ||| | |||||||||||| |||||||| ||||||||||  |||| |||||||||||||||| ||    
T  27606709 tgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttcggcag 27606611  T
Q  231 agagg 235  Q
    |||||    
T  27606610 agagg 27606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 24285696 - 24285798
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||   || ||||| | |||||| |||||||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttcggtag 24285795  T
Q  231 aga 233  Q
    |||    
T  24285796 aga 24285798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 42249520 - 42249418
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| ||||||| |||  ||| | | |||||| |||||||||||||| ||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttcggcag 42249421  T
Q  231 aga 233  Q
    |||    
T  42249420 aga 42249418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 26903396 - 26903296
Alignment:
Q  133 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagag 232  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||  ||| | |||||||| |||||||||||||| ||||    
T  26903396 tcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccgaaaatgtccatcgttttagacgaaatttcggcagag 26903297  T
Q  233 a 233  Q
    |    
T  26903296 a 26903296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 34070669 - 34070567
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||| ||||||||| ||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttcggcag 34070570  T
Q  231 aga 233  Q
    |||    
T  34070569 aga 34070567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 24292371 - 24292475
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcg-ggaattttcatcgtttcagacgaaatttcggt 228  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||   ||| | | |||||| |||||||||||||||    
T  24292371 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccgaaaaatgtccgtcgtttaagacgaaatttcggt 24292470  T
Q  229 agaga 233  Q
    |||||    
T  24292471 agaga 24292475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  180 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||||||||| ||||||||||  |||  |||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 21322875 - 21322814
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 192  Q
    |||||||||||||||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  21322875 tgtcataccccaaattttgaccactttt-tctatttgtaccaaattttattcgtatttttaaa 21322814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 20917520 - 20917570
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattc 181  Q
    |||||||| | |||||||||||||||||||||||| |||  ||||||||||    
T  20917520 tgtcatactctaaattttgaccacttttctctatttttattcattttattc 20917570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 27683434 - 27683381
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27683434 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 20372110 - 20372078
Alignment:
Q  399 gtcaatgagtccgaaaatttcagcaagggtcca 431  Q
    |||||| ||||||||||||||||||||||||||    
T  20372110 gtcaataagtccgaaaatttcagcaagggtcca 20372078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 3432956 - 3432818
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |    
T  3432956 ctgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 3432857  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
     ||||| |||||||||||| |||||||||||||| ||||    
T  3432856 aagaggttactttgaagtacctcattttttattccgagt 3432818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 130 - 268
Target Start/End: Original strand, 31548522 - 31548660
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  31548522 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 31548621  T
Q  230 gagaggatactttgaagtaactcattttttattcggagt 268  Q
      |||| |||||||||||| ||||||||| |||| ||||    
T  31548622 aggaggttactttgaagtacctcatttttgattccgagt 31548660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 31539954 - 31540091
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |     
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagt 31540091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 35104129 - 35103992
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |     
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
     |||| |||||||||||| ||||||||| |||| ||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagt 35103992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 41746758 - 41746602
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-ta 229  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||  |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  230 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
     ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  41746658 aagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 41746602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 131 - 286
Target Start/End: Complemental strand, 32137819 - 32137664
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |     
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  231 agaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
    | | | |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  32137719 ataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 32137664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 29221554 - 29221429
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    |||||||||||||||||| |    
T  29221554 ctgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggca 29221455  T
Q  230 gagaggatactttgaagtaactcattt 256  Q
    |||||| || |||||| || |||||||    
T  29221454 gagagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||||||| || | || |||   || ||||||||||||||||||| | ||    
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  231 agaggatactttgaagtaactcattt 256  Q
     |||| |||||  ||||| |||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 21498963 - 21498861
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||  |||||| |||||||  ||| ||| | | |||||| |||||||||||||| ||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggcag 21498864  T
Q  231 aga 233  Q
    |||    
T  21498863 aga 21498861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 51058450 - 51058359
Alignment:
Q  133 tcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 225  Q
    |||||||||||||||||| ||||||||| | |||| |  ||||||||||||||||||||||  |||||||||| | |||||| ||||||||||    
T  51058450 tcataccccaaattttgatcacttttctttgttct-attcattttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttc 51058359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23223186 - 23223131
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  23223186 ttgtaccttgctatgagattaaagcaattctaaatagacattcaaggtatatatca 23223131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 28457556 - 28457673
Alignment:
Q  133 tcataccccaaattttgaccacttttctc-tattcttacccatttta-ttcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||||| | || |||||||||||| || ||||||| || | |  |||   || ||||||||||||||||||||  ||    
T  28457556 tcataccccaaattttgaccacttttctcgtttttttacccattttattttgtattttaaacgccaagaaggatcgtcgtttcagacgaaatttcgacag 28457655  T
Q  231 agaggatactttgaagta 248  Q
    ||||| ||||||||||||    
T  28457656 agaggttactttgaagta 28457673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 8241487 - 8241438
Alignment:
Q  207 tcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 256  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  8241487 tcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 28457826 - 28457864
Alignment:
Q  394 ataatgtcaatgagtccgaaaatttcagcaagggtccaa 432  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28457826 ataatgtcaatgagtccgaaaatttcagcaggggtccaa 28457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8579341 - 8579413
Alignment:
Q  182 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  8579341 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 8579413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 20314092 - 20314058
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctatt 165  Q
    |||||||||||||||||||||||||||| ||||||    
T  20314092 tgtcataccccaaattttgaccacttttttctatt 20314058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31313066 - 31313020
Alignment:
Q  1 ttgtaccttactatgagattgaagcaattctaaatagacattcaagg 47  Q
    ||||||||| |||||||||| || |||||||||||||||| ||||||    
T  31313066 ttgtaccttgctatgagattaaaccaattctaaatagacaatcaagg 31313020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 12465751 - 12465698
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  12465751 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 12465698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 31313124 - 31313161
Alignment:
Q  12 tatgagattgaagcaattctaaatagacattcaaggtc 49  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  31313124 tatgagattaaagcaattctaaatagacaatcaaggtc 31313161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 52100017 - 52100078
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 192  Q
    ||||||| || |||||||||||| |||||||| || |||| |||||| |||||| |||||||    
T  52100017 tgtcatatcctaaattttgaccatttttctctgtttttacacattttgttcgtacttttaaa 52100078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 23950396 - 23950428
Alignment:
Q  399 gtcaatgagtccgaaaatttcagcaagggtcca 431  Q
    |||||| ||||||||||||||||||||||||||    
T  23950396 gtcaataagtccgaaaatttcagcaagggtcca 23950428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 28993337 - 28993305
Alignment:
Q  399 gtcaatgagtccgaaaatttcagcaagggtcca 431  Q
    |||||| ||||||||||||||||||||||||||    
T  28993337 gtcaataagtccgaaaatttcagcaagggtcca 28993305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 149 - 12
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||  ||||||||||||||||| || |     
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  231 agaggatactttgaagtaactcattttttattcggagt 268  Q
    ||||| |||||||||||| |||||||||||||| ||||    
T  49 agaggttactttgaagtacctcattttttattccgagt 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 4390 - 4518
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  231 agaggatactttgaagtaactcatttttt 259  Q
    ||||| |||||||||||| ||||||||||    
T  4490 agaggttactttgaagtacctcatttttt 4518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 995 - 839
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| |    
T  995 ctgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggca 896  T
Q  230 gagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 286  Q
    || ||| ||||||||| || ||||||||| |||| |||| |||| || ||| |||||    
T  895 gaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctt 839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 40898 - 40807
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaat 222  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaat 40807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||| ||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  231 agaggatactttgaagtaactcatttt 257  Q
      ||| |||||||||||| ||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 139 - 264
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | | ||||||| |  |||||||||||||||||        
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  231 agaggatactttgaagtaactcattt 256  Q
    ||||  |||||||||||| |||||||    
T  239 agagtttactttgaagtacctcattt 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtag 230  Q
    |||||||||||||||||||||||||||||| |  | |||| |||||| |||||| |||||||| || |||||||| | ||||||||||||||||||| ||    
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  231 agaggatactttgaagtaactcattt 256  Q
    ||||| ||||||| |||| |||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 438 - 335
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||| |    
T  438 ctgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttcggca 339  T
Q  230 gaga 233  Q
    ||||    
T  338 gaga 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaattt 224  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 7694 - 7622
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||| |||||||    
T  7694 tgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 192526 - 192622
Alignment:
Q  129 gctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttc 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  192526 gctgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 192622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 65604 - 65501
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||||||||||||  |||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  65604 ctgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 65505  T
Q  230 gaga 233  Q
    ||||    
T  65504 gaga 65501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 81852 - 81749
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||| || |    
T  81852 ctgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattttggca 81753  T
Q  230 gaga 233  Q
    ||||    
T  81752 gaga 81749  T

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Target: scaffold0389 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 415 - 518
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggta 229  Q
    ||||||||||| ||||||||||||||||||| || | |||| |||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||||| |    
T  415 ctgtcataccctaaattttgaccacttttctttaattttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttcggca 514  T
Q  230 gaga 233  Q
    ||||    
T  515 gaga 518  T

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Target: scaffold0290 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  180 tcgtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    |||| ||||||||| | ||||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold1487 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 801 - 762
Alignment:
Q  138 ccccaaattttgaccacttttctctattcttacccatttt 177  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  801 ccccaaattttgaccacttttctctattcttacccatttt 762  T

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Target: scaffold0514 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 10974 - 10912
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctattcttacc-cattttattcgtatttttaaa 192  Q
    ||||||||||||||||||||||||||||| |||||| |||||  ||||||||||||||||||||    
T  10974 ctgtcataccccaaattttgaccactttt-tctatttttaccaaattttattcgtatttttaaa 10912  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 257  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0990 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 3127 - 3085
Alignment:
Q  14 tgagattgaagcaattctaaatagacattcaaggtctatatca 56  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  3127 tgagattgaagcaattataaatagacattgaaggtatatatca 3085  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 11507 - 11457
Alignment:
Q  131 tgtcataccccaaattttgaccacttttct-ctattcttacccattttatt 180  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||||||||    
T  11507 tgtcgtaccccaaattttgaccattttttttctattcttacccattttatt 11457  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 65744 - 65710
Alignment:
Q  130 ctgtcataccccaaattttgaccacttttctctat 164  Q
    ||||||||||| |||||||||||||||||||||||    
T  65744 ctgtcataccctaaattttgaccacttttctctat 65710  T

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Target: scaffold0455 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 6109 - 6056
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  6109 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 6056  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 59736 - 59789
Alignment:
Q  201 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 254  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  59736 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 59789  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 61288 - 61418
Alignment:
Q  131 tgtcataccccaaattttgaccacttttctcta-ttcttaccca-ttttattcgta---tttttaaagtcgggaattttcatcgtttcagacgaaatttc 225  Q
    |||||||||||||||||||||||| |||||||| || |||| || |||||||||||   ||||| ||| |   |||||||||  ||||| || |||||||    
T  61288 tgtcataccccaaattttgaccac-tttctctattttttactcatttttattcgtatttttttttaagccaaaaattttcattatttcaaacaaaatttc 61386  T
Q  226 ggtagagaggatactttgaagtaactcatttt 257  Q
     | | ||||| |||||||||||| ||||||||    
T  61387 agcatagaggttactttgaagtacctcatttt 61418  T

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