View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1296_low_8 (Length: 534)

Name: NF1296_low_8
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1296_low_8
NF1296_low_8
[»] chr4 (3 HSPs)
chr4 (29-526)||(165865-166362)
chr4 (177-526)||(105466-105825)
chr4 (40-168)||(105235-105363)
[»] chr7 (2 HSPs)
chr7 (352-523)||(13054128-13054299)
chr7 (40-152)||(13053749-13053861)
[»] scaffold0013 (3 HSPs)
scaffold0013 (354-514)||(90958-91119)
scaffold0013 (40-163)||(91396-91519)
scaffold0013 (253-320)||(91202-91269)
[»] chr8 (9 HSPs)
chr8 (46-156)||(5720992-5721102)
chr8 (46-156)||(5688260-5688370)
chr8 (366-523)||(5687616-5687773)
chr8 (40-153)||(5653926-5654039)
chr8 (46-154)||(5668475-5668582)
chr8 (368-523)||(5666546-5666701)
chr8 (366-523)||(5719732-5719889)
chr8 (410-492)||(5653030-5653112)
chr8 (271-322)||(5653772-5653823)
[»] chr3 (3 HSPs)
chr3 (40-154)||(12136454-12136568)
chr3 (358-514)||(12136081-12136237)
chr3 (250-323)||(12136278-12136351)


Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 29 - 526
Target Start/End: Original strand, 165865 - 166362
Alignment:
Q  29 aaattatgggttgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165865 aaattatgggttgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaat 165964  T
Q  129 atcctgctgtcgcttcaggcaagtactattcaattaattgtcacaacttttgatcattgatgtttgatttatttgtgctacctggtttaattttgacaca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  165965 atcctgctgtcgcttcaggcaagtactattcaattaattgtcacaacttttgatcattgatgtttgatttatttgtgctacttggtttaattttgacaca 166064  T
Q  229 actttattttttaattagtgtagagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtattaacatg 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  166065 actttattttttaattagtgtagagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtattaatatg 166164  T
Q  329 tattcattcatatatgaaaattaataaactaattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacat 428  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166165 tattcattcatatatgaaaattaataaactgattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacat 166264  T
Q  429 gaatatgttgagtgcactgcatcggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctc 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166265 gaatatgttgagtgcactgcatcggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctc 166362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 177 - 526
Target Start/End: Original strand, 105466 - 105825
Alignment:
Q  177 tttgatcattgatgtttgatttatttgtgctacctggtttaattttgacacaactttattttttaattagtgtagagtaaaaatggtggattggcagctt 276  Q
    |||||||| | ||||||||||||||| ||||||||| | || |||| ||||||||  |||||| ||| | || |||||||||| ||||| |||||||| |    
T  105466 tttgatcacttatgtttgatttatttatgctacctgatctacttttaacacaactaaattttt-aatgattgcagagtaaaaagggtggtttggcagcat 105564  T
Q  277 gggagccagcaggagctccaaaatggttagaagtaagtattgtattaacatgtattcattcatatatgaaaa-----------ttaataaactaattagc 365  Q
    ||||||| |||||||||| | | |||||||||||||||||  |||||| ||||| ||||||||   |||||            || |||||||||||| |    
T  105565 gggagcccgcaggagctcaagagtggttagaagtaagtatcatattaatatgtactcattcatgggtgaaatccattcatcagttgataaactaattacc 105664  T
Q  366 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagctt 465  Q
    ||| |||||||||||||| ||||||||||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||| ||| || ||||||||||    
T  105665 tttattatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtgcactggatcagcaattcaagctt 105764  T
Q  466 taattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctc 526  Q
    || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  105765 tagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctc 105825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 105235 - 105363
Alignment:
Q  40 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 139  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||    
T  105235 tgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgtc 105334  T
Q  140 gcttcaggcaagtactattcaattaattg 168  Q
    ||||||||||||| ||||| |||| ||||    
T  105335 gcttcaggcaagtgctattaaatttattg 105363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 352 - 523
Target Start/End: Original strand, 13054128 - 13054299
Alignment:
Q  352 ataaactaattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatc 451  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| |  ||||||||| ||||| |||| |||||||||||||||| | |    
T  13054128 ataaactaattacctttgttatttatttgcaggtactgaatcccactgaatttttcgcagacattgtaattgaatatgagtatgttgagtgcactggacc 13054227  T
Q  452 ggcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcat 523  Q
    ||| |||||||||||| || |||| || || |||||||||| |||||||||||| |||||||||||||||||    
T  13054228 ggcaattcaagctttagttatgttcaataagctatatccagagcataggaagaacgagatagagaatttcat 13054299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 13053749 - 13053861
Alignment:
Q  40 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 139  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | ||| ||||    
T  13053749 tgtttcagtgttgtctacttttatcaatgttgcctcctgagattgtgggtgaaaatatggaaccagagaggttatatgattcagtcaatcttctgttgtc 13053848  T
Q  140 gcttcaggcaagt 152  Q
     ||||||| ||||    
T  13053849 acttcaggtaagt 13053861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 354 - 514
Target Start/End: Complemental strand, 91119 - 90958
Alignment:
Q  354 aaactaattagctttgttatttattttc-aggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcg 452  Q
    ||||||||||||||| || ||||||||| || |||| |||||||||||| |||| | |||||| ||| ||||||||||||||||||||||||||| | |     
T  91119 aaactaattagctttcttgtttattttccagctactaaatcccacagaacttttcgaggacatggtaattgaacatgaatatgttgagtgcactggaaca 91020  T
Q  453 gcgattcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagataga 514  Q
     ||||| |||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  91019 acgattgaagctttagttttgttcaagaagctatatccagggcataggaagaacgagataga 90958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 91519 - 91396
Alignment:
Q  40 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 139  Q
    |||| ||||||||| |||  ||||||||||| |||||||  | ||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  91519 tgtttcagtgttgtttactattatcaatgtttcctccagcaactgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatctcctgttgtc 91420  T
Q  140 gcttcaggcaagtactattcaatt 163  Q
     ||||||||| ||||| |||||||    
T  91419 acttcaggcatgtactgttcaatt 91396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 91269 - 91202
Alignment:
Q  253 gtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgta 320  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  91269 gtaaaaatggtggattggcagcttgggagccagcaggaggtcaagaatggttagaagtaagtattgta 91202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 5721102 - 5720992
Alignment:
Q  46 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 145  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || | || |||||    
T  5721102 agtgttgtctgcttttatcaatgttgcctccagagattgtgggggaaaaaatggaacctgaaaggttatatgattcagtcaatatcttgttttctcttca 5721003  T
Q  146 ggcaagtacta 156  Q
    |||||||||||    
T  5721002 ggcaagtacta 5720992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 5688370 - 5688260
Alignment:
Q  46 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 145  Q
    |||||||||| | ||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| || | || |||||    
T  5688370 agtgttgtctgcttttatcaatgttgtctccggagattgtaggggaaaaaatggaacctgaaaggttatatgattccgtcaatatcatgttttctcttca 5688271  T
Q  146 ggcaagtacta 156  Q
    |||||||||||    
T  5688270 ggcaagtacta 5688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 5687773 - 5687616
Alignment:
Q  366 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagctt 465  Q
    ||||||||| |||||||| |||||||||| |  |||||| ||| ||| ||||||||||| | |||||||||||| |||||| ||||  |||||||||||     
T  5687773 tttgttattaattttcagctactcaatccaattgaatttcttgaggaaattgtagttgagcgtgaatatgttgaatgcacttcatcatcgattcaagcta 5687674  T
Q  466 taattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcat 523  Q
    |  |||||||||| ||| ||||||| | |||||| ||| ||||  |||||||||||||    
T  5687673 tggttttgtttaaaaaattatatcccgagcatagaaaggaagaagtagagaatttcat 5687616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 5654039 - 5653926
Alignment:
Q  40 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 139  Q
    |||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||| | | ||||| |||||| ||||||||||||||||| |  || ||||    
T  5654039 tgtttcagtgttgtctacttttgtcaatgttgcctccaaagattgtgggggaaatggttgaacccgaaaggctatatgattcagtcaattttgtgttgtc 5653940  T
Q  140 gcttcaggcaagta 153  Q
     ||||||| |||||    
T  5653939 acttcaggaaagta 5653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 5668582 - 5668475
Alignment:
Q  46 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 145  Q
    |||||||||| | |||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||  | || |||||    
T  5668582 agtgttgtctgcttttatcgatgctgcctccggagattgtgggg-aaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttctcttca 5668484  T
Q  146 ggcaagtac 154  Q
    |||||||||    
T  5668483 ggcaagtac 5668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 523
Target Start/End: Complemental strand, 5666701 - 5666546
Alignment:
Q  368 tgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagcttta 467  Q
    ||||||| |||||||| |||||||||| | ||||||| | | ||| ||||||||||| | |||||||||||| |||||| ||||  | ||||||||| |     
T  5666701 tgttattaattttcagctactcaatccaatagaatttctcgaggaaattgtagttgagcgtgaatatgttgaatgcacttcatcatcaattcaagctatg 5666602  T
Q  468 attttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcat 523  Q
     |||||||||| ||| ||||||| | |||||| ||| ||||  |||||||||||||    
T  5666601 gttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcat 5666546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 523
Target Start/End: Complemental strand, 5719889 - 5719732
Alignment:
Q  366 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagctt 465  Q
    ||||||| | |||||||| |||||||||| | ||||||| ||| ||| | ||||||||| | |||||||||||| |||||| ||||  | |||||||||     
T  5719889 tttgttaataattttcagctactcaatccaatagaatttcttgaggaaaatgtagttgagcgtgaatatgttgaatgcacttcatcatcaattcaagcta 5719790  T
Q  466 taattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcat 523  Q
    |  |||||||||| ||| ||||||| | |||||| ||| ||||  |||||||||||||    
T  5719789 tggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcat 5719732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 492
Target Start/End: Complemental strand, 5653112 - 5653030
Alignment:
Q  410 ggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgattcaagctttaattttgtttaagaaactatatccag 492  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||| ||||||||||||| ||||||||||    
T  5653112 ggacattgttgttgagcatgaatatgttgaatgcactggatcagcaattcaagccttagttttgtttaagaagctatatccag 5653030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 5653823 - 5653772
Alignment:
Q  271 cagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtatt 322  Q
    |||| |||||||||||||||| || | |||||||||||||||||||| ||||    
T  5653823 cagcgtgggagccagcaggaggtcaagaatggttagaagtaagtattatatt 5653772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 12136568 - 12136454
Alignment:
Q  40 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 139  Q
    |||| |||||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  12136568 tgtttcagtgttgcctacttttatcagtgttgcctccaaagattgtaggggaaaagatggaaccagaaaggttatatgattcagttaatatcctattgtc 12136469  T
Q  140 gcttcaggcaagtac 154  Q
     ||||||||||||||    
T  12136468 tcttcaggcaagtac 12136454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 358 - 514
Target Start/End: Complemental strand, 12136237 - 12136081
Alignment:
Q  358 taattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtgcactgcatcggcgat 457  Q
    |||||| |||| ||||| ||||| || ||||||||||  |||| ||| |||  || || || || || |||||||||||||| ||||||| |||||| ||    
T  12136237 taattaactttattattgatttttagttactcaatcctgcagagtttattgctgatatcgtggtcgagcatgaatatgttgattgcactggatcggcaat 12136138  T
Q  458 tcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagataga 514  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  12136137 tcaagctttagttttgttcaagaaattatatccagagcataggaagaaagagataga 12136081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 12136351 - 12136278
Alignment:
Q  250 agagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtatta 323  Q
    ||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  12136351 agagtaaaaatggcggtttagcagcatgggagccagcaggagctccagaatggttagaagtaagtattatatta 12136278  T

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