View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1296_low_9 (Length: 510)
Name: NF1296_low_9
Description: NF1296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1296_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 83 - 412
Target Start/End: Complemental strand, 41704299 - 41703970
Alignment:
| Q |
83 |
atcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagattta |
182 |
Q |
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| T |
41704299 |
atcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagattta |
41704200 |
T |
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| Q |
183 |
attttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt-ttaacaaactctaa |
281 |
Q |
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| T |
41704199 |
attttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaattagtaactacttttaa |
41704101 |
T |
|
| Q |
282 |
caatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtc |
381 |
Q |
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| T |
41704100 |
caatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtc |
41704001 |
T |
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| Q |
382 |
ttcggattgtgtatagtgccaaggtaaacaa |
412 |
Q |
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| T |
41704000 |
ttcggattgtgtatagtgccaaggtaaacaa |
41703970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
| Q |
259 |
taactacttttaacaaactctaacaatatctaatgattctctaattata |
307 |
Q |
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| T |
33826671 |
taactacttttaacaaactctaacaatatctatcaattcactaattata |
33826623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
| Q |
259 |
taactacttttaacaaactctaacaatatctaatgattctctaa |
302 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
10908990 |
taactacatttaacaaactctaacaatatctaataaatctctaa |
10908947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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