View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297-Insertion-4 (Length: 452)
Name: NF1297-Insertion-4
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 9 - 452
Target Start/End: Original strand, 40313965 - 40314408
Alignment:
| Q |
9 |
ttaaaagatcgcacaacttggtaccgtgattgtcggagttcagaagttttcacaatgttcccagctggaaatggaggaacaattgaacttgtttacacac |
108 |
Q |
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| T |
40313965 |
ttaaaagatcgcccaacttggtaccgtgattgtcggagttcagaagttttcacaatgttcccagctggaaatggaggaacaattgaacttgtttacacac |
40314064 |
T |
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| Q |
109 |
aggtgaagaatcaaatgtgaataggatgctttatttattatttaacgagcattttgcataaacgtttagtttgctgcagacatatgctccaatgacactg |
208 |
Q |
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| T |
40314065 |
aggtgaagaatcaaatgtgaataggatgctttatttattatttaatgagcattttgcataaacgtttagtttgctgcagacatatgctccaatgacactg |
40314164 |
T |
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| Q |
209 |
gcttctgctcgcgacttctggactctaagatacactacaaatttggaaaacggaagtgttgtggtgagtatatttgctgtcaaaagcgttactattgttg |
308 |
Q |
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| T |
40314165 |
gcttctgctcgcgacttctggactctaagatacactacaaatttggaaaacggaagtgttgtggtgagtatatttgctgtcaaaagcgttactattgttg |
40314264 |
T |
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| Q |
309 |
catgggattatatatctagctgcatcgatttaatataattgcactttggaaggtttgtgaaaggtcactgtctggtactggtgctggccctaatgctgca |
408 |
Q |
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| T |
40314265 |
catgggattatatatctagctgcatcgatttaatataattgcactttggaaggtttgtgaaaggtcactgtctggtactggtgctggccctaatgctgca |
40314364 |
T |
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| Q |
409 |
gccgcctcacagtttgagagggctgaaatgctccctagtggcta |
452 |
Q |
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| T |
40314365 |
gccgcctcacagtttgagagggctgaaatgctccctagtggcta |
40314408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 21741906 - 21741804
Alignment:
| Q |
178 |
tttgctgcagacatatgctccaatgacactggcttctgctcgcgacttctggactctaagatacactacaaatttggaaaacggaagtgttgtggtgagt |
277 |
Q |
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| T |
21741906 |
tttgctacagacatatgctccaacgacgctagctcctgcccgggatttctggactcttcgatacactacaactttggacaatggcagtcttgtggtgagt |
21741807 |
T |
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| Q |
278 |
ata |
280 |
Q |
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| T |
21741806 |
ata |
21741804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 21742032 - 21741968
Alignment:
| Q |
50 |
agaagttttcacaatgttcccagctggaaatggaggaacaattgaacttgtttacacacaggtga |
114 |
Q |
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| T |
21742032 |
agaagttttcacaatgtttcctgccggaaatgggggaaccattgagcttatttacacacaggtga |
21741968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 21741737 - 21741685
Alignment:
| Q |
350 |
cactttggaaggtttgtgaaaggtcactgtctggtactggtgctggccctaat |
402 |
Q |
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| T |
21741737 |
cacttttgaaggtttgtgagaggtccctgtctggttctggcactggccctaat |
21741685 |
T |
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