View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1297-Insertion-5 (Length: 767)
Name: NF1297-Insertion-5
Description: NF1297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1297-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 177 - 392
Target Start/End: Complemental strand, 10545402 - 10545187
Alignment:
| Q |
177 |
tgatatttattttcattgctgaaggatgaaggtgttacaactatatatagagctacaatgatagtatatgctaagatattgtgaactctatcttatagga |
276 |
Q |
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| T |
10545402 |
tgatatctgttttcattactgaagcatgaaggtgttacaactatatatagagttacaatgatagtatatgttaagctattgtgaactctatattatagga |
10545303 |
T |
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| Q |
277 |
tcatgtcctctatcataactaactctgagagttagttacaaccaactttatcactagggttcttaataacctgtggactaagtaattgtgccctagcgtg |
376 |
Q |
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| T |
10545302 |
tcacgtcctctatcataactaactctgagagttagttacaaccaactttatcactagggttgttaataacccgtggactaagtaactgtgccctagcgtg |
10545203 |
T |
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| Q |
377 |
ttcttcttccttattg |
392 |
Q |
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|||||||||||||||| |
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| T |
10545202 |
ttcttcttccttattg |
10545187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 10596528 - 10596448
Alignment:
| Q |
355 |
taagtaattgtgccctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata |
435 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||| |||| || |||||||| ||||| |||||||||| |
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| T |
10596528 |
taagtaattgtgccctagcgtgttcttcctccttattggctagcaagcttgactccaactcttttatatcttgtttcaata |
10596448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 5918487 - 5918432
Alignment:
| Q |
471 |
ttgtatctccattcacaaattaatgagaataacacttctcattcatattctttctc |
526 |
Q |
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| T |
5918487 |
ttgtatcttcattcacaagttaatgagaataacacttttcattcatattctttctc |
5918432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 471 - 529
Target Start/End: Complemental strand, 5922174 - 5922116
Alignment:
| Q |
471 |
ttgtatctccattcacaaattaatgagaataacacttctcattcatattctttctctct |
529 |
Q |
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| T |
5922174 |
ttgtatcttcattcacaagttaatgagaataacacttttcattcatattctctctctct |
5922116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 15307898 - 15307965
Alignment:
| Q |
368 |
cctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata |
435 |
Q |
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| T |
15307898 |
cctagcgtgttcttcttccttattggctagcaagcttgactctaactccttgatatcttgttttaata |
15307965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 15313192 - 15313259
Alignment:
| Q |
368 |
cctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata |
435 |
Q |
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| T |
15313192 |
cctagcgtgttcttcttccttattggctagcaagcttgactctaactccttgatatcttgttttaata |
15313259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 534
Target Start/End: Complemental strand, 36164996 - 36164932
Alignment:
| Q |
469 |
cattgtatctccattcacaaattaatgagaataacacttctcattcatattctttctctcttaata |
534 |
Q |
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| T |
36164996 |
cattgtatcttcattcacaagt-aatgagaacaacacttttcattcatattctttctctcttaata |
36164932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 46142962 - 46142883
Alignment:
| Q |
356 |
aagtaattgtgccctagcgtgttcttcttccttattgactagcagatttgattctaactctttaatatcctgtttcaata |
435 |
Q |
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|||||||| |||| ||||||||||||||||||||||| ||||| |||| |||||||| || || || |||||||||| |
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| T |
46142962 |
aagtaattatgccgtagcgtgttcttcttccttattgggtagcaagcttgactctaactcattgatgtcttgtttcaata |
46142883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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