View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_high_10 (Length: 409)
Name: NF12970_high_10
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 21360024 - 21359785
Alignment:
| Q |
16 |
gttactactttggttttcttaccttaaactaaaaattcacctaaaataaaaatccaagcttatagatttttctctctctaagagggaactgcaggtttgt |
115 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21360024 |
gttagtactttggttttcttaccttaaactaaaaattcacctaaaataaaaatccaagcttatagatttttctctctctaaaagggaactgcaggtttgt |
21359925 |
T |
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| Q |
116 |
tatcaaagaagtgattttttgaataaagtgcttttgatttgtgggaaaaaagcttcaatagaagacagggtgctaaaagtagcacaggatcagaaaatgg |
215 |
Q |
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| T |
21359924 |
tatcaaagaagtgattttttgaataaagtgcttttgatttgtgggaaaaaagcttcaatagaagacagggtgctaaaagtagcacaggatcagaaaatgg |
21359825 |
T |
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| Q |
216 |
gtatctttctcttcctactttttcatttaaagttaggtcc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21359824 |
gtatctttctcttcctactttttcatttaaagttaggtcc |
21359785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 21359765 - 21359656
Alignment:
| Q |
287 |
cttgggtttgtttctgaaactgtttctgactagggtttgaatgaggttatttattatgctgaaatcaatgttgtttgcataattgactgtttctatagac |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21359765 |
cttgggtttgtttctgaaactgtttctgactagggtttgaatgaggttatttattatgctgaaatcaatgttgtttgcataattgactgtttctgtagac |
21359666 |
T |
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| Q |
387 |
ttcttttcac |
396 |
Q |
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| T |
21359665 |
ttcttttcac |
21359656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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