View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_high_21 (Length: 205)
Name: NF12970_high_21
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 29253884 - 29253709
Alignment:
| Q |
11 |
tcgaagaatatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
110 |
Q |
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| T |
29253884 |
tcgaacaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
29253785 |
T |
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| Q |
111 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatac |
186 |
Q |
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| T |
29253784 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatac |
29253709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 29288033 - 29288187
Alignment:
| Q |
33 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
132 |
Q |
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| T |
29288033 |
aatgagaatatatgatcctgatcaagcaaccttagaggctctaagaggctctaatatagaacttgttattggggtccgtaatgaagacattcaatcaatt |
29288132 |
T |
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| Q |
133 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatact |
187 |
Q |
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| T |
29288133 |
gcctatagtgtttcatcagctactaattgggtccaaaacaacatactaaaatact |
29288187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 29440745 - 29440636
Alignment:
| Q |
20 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
118 |
Q |
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| T |
29440745 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29440646 |
T |
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| Q |
119 |
acattcaatc |
128 |
Q |
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|||||||||| |
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| T |
29440645 |
acattcaatc |
29440636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 29444392 - 29444283
Alignment:
| Q |
20 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
118 |
Q |
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|||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||| |
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| T |
29444392 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29444293 |
T |
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| Q |
119 |
acattcaatc |
128 |
Q |
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| T |
29444292 |
acattcaatc |
29444283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 13431577 - 13431643
Alignment:
| Q |
94 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
160 |
Q |
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| T |
13431577 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtatttcatcagcaactaatt |
13431643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 13303393 - 13303327
Alignment:
| Q |
94 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
160 |
Q |
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| T |
13303393 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtttttcatcagcaactaatt |
13303327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 21287462 - 21287308
Alignment:
| Q |
33 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
132 |
Q |
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||||||||| ||| |||||||||||||||| || ||||| |||||| ||| | || ||||||||||| || ||||||||| ||||| ||||||| |
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| T |
21287462 |
aatgagaatttatgatcctgatcaagcaacattagaagctctaagaggttctaacatagaacttgtcattggagttcctaatgaaaacattgaatcaatt |
21287363 |
T |
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| Q |
133 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatact |
187 |
Q |
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|| || | |||||||||| | | |||||||||||||||||||| |||| |||| |
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| T |
21287362 |
gctaatagtgtttcatcagctacttattgggtccaaaacaatatattaaattact |
21287308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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