View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12970_high_3 (Length: 532)
Name: NF12970_high_3
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 312 - 523
Target Start/End: Original strand, 43714648 - 43714859
Alignment:
| Q |
312 |
cctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaataaacaactcagcaaattgtgaactacta |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714648 |
cctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaataaacaactcagcaaattgtgaactacta |
43714747 |
T |
|
| Q |
412 |
ctagatttcctgcatacaaattgcaacctttattgcatgcaacttggtaaactccatatcctatatttagttaatatacacatgcaaatgttctttcagt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43714748 |
ctagatttcctgcatacaaattgcaacctttattgcatgcaaattggtaaactccatatcctatatttggttaatatacacatgcaaatgttctttcagt |
43714847 |
T |
|
| Q |
512 |
cttcagaattat |
523 |
Q |
| |
|
||| |||||||| |
|
|
| T |
43714848 |
cttgagaattat |
43714859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 43714354 - 43714542
Alignment:
| Q |
18 |
atcactttaagcaaaagttctgggcaggaatcatactttgtttcttatttataatgaaccgcagaagtttaactactttgaaactaattatgaagtttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714354 |
atcactttaagcaaaagttctgggcaggaatcatactttgtttcttatttataataaaccgcagaagtttaactactttgaaactaattatgaagtttca |
43714453 |
T |
|
| Q |
118 |
gggcctaactcagcctcaaaaaattgacttgtaagtcaaagattgtctagactttataatatgtcaaatttggtactttttcctagtag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43714454 |
gggcctaactcagcctcaaaaaattgacttgtaagtcaaagattgtctagactttataatatgtcaaatttggtactttttcctagtag |
43714542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 52893371 - 52893183
Alignment:
| Q |
18 |
atcactttaagcaaaagttctgggcagg-aatcatactttgtttcttatttataatgaaccgcagaagtttaactactttgaaactaattatgaagtttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||| |||||||| |
|
|
| T |
52893371 |
atcactttaagcaaaagttctgggcagggaatcatactttgtttcttatttatactgaattgcagaaacttg-ctactttgaaactaattacgaagtttc |
52893273 |
T |
|
| Q |
117 |
agggcctaactcagcctcaaaaaattgacttgtaagtcaaagattgtctagactttataatatgtcaaatttggtactttttcctagtag |
206 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||| || | ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52893272 |
agggcctaattcagcctcacaaaattgacttataaggcacaaattgtctagactttatactatgtcaaatttggtactttttcctagtag |
52893183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 312 - 523
Target Start/End: Complemental strand, 52893076 - 52892868
Alignment:
| Q |
312 |
cctacacagattaaaatattttacaattattctaaacacgtaaatgatatcaaacattaaatttctagcaataaacaactcagcaaattgtgaactacta |
411 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
52893076 |
cctatacagattaaaatattttacaaatattctaaacacgtgaatgatatcaaacact-----tctagcaataacgaacttgccaaattgtgaattacta |
52892982 |
T |
|
| Q |
412 |
ctagatttcctgcatacaaattgcaacctttatt-----gcatgcaacttggtaaactccatatcctatatttagttaatatacacatgcaaatgttctt |
506 |
Q |
| |
|
||||||||| |||| |||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52892981 |
---gatttcctgtgtacagattgcaacctttttttttttgcatgcaaattggtaaactaaatatcctatatttagttaatatatggatgcaaatgttctt |
52892885 |
T |
|
| Q |
507 |
tcagtcttcagaattat |
523 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
52892884 |
tgagtcttcagaattat |
52892868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University