View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_high_4 (Length: 531)
Name: NF12970_high_4
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 16 - 513
Target Start/End: Complemental strand, 7330347 - 7329850
Alignment:
| Q |
16 |
atagagcatgtgaccggagagagcaaaaaagaaaagattcgcgttggaatggattcggtcattcataaaattcctcaaggacaagagatatcagatggat |
115 |
Q |
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| T |
7330347 |
atagagcatgtgaccggagagagcaaaaaagaaaagattcgcgttggaatggattcggtcattcataaaattcctcaaggacaagagatatcagatggat |
7330248 |
T |
|
| Q |
116 |
tgaagaaagaaattttgaagaaattgactgaccctattatcattcctagagaaaatcaatacaagagttccttaagaagaatcaaatctcttcaagaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330247 |
tgaagaaagaaattttgaagaaattgactgaccctattatcattcctagagaaaatcaatacaagagttccttaagaagaatcaaatctcttcaagaatt |
7330148 |
T |
|
| Q |
216 |
actagaaagttaccctcaatttgaggaaccaaaattagaaaaagaaaaggaaaattcaccattgggaatggtgatacctttacaaagaactctttcacta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330147 |
actagaaagttaccctcaatttgaggaaccaaaattagaaaaagaaaaggaaaattcaccattgggaatggtgatacctttacaaagaactctttcacta |
7330048 |
T |
|
| Q |
316 |
cctgatcttcaatcttttacctatgcttctcagaatgaggagatttttaacgttcattcgaaaaatcaacttcaattcgataaacttgtggaagatttgg |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7330047 |
cctgatcttcaatcttttacctatgcttctctgaatgaggagatttttaacgttcattcgaaaaatcaacttcaattcgataaacttgtggaagatttgg |
7329948 |
T |
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| Q |
416 |
ctcaagaaaaatttgcaagtacagatgaaactgatttagtgattagtaatattgtgaaatcaggatcagattgtatcgataagattaatggaatggtg |
513 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7329947 |
ctcaagaaaaatttgcaagtacagatgaaagtgattcagtgattagtaatattgtgaaatcaggatcagattgtatcgataagattaatggaatggtg |
7329850 |
T |
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