View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_high_7 (Length: 499)
Name: NF12970_high_7
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_high_7 |
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| [»] scaffold0045 (4 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 60875 - 60561
Alignment:
| Q |
14 |
aaagtttcttctaataaaatcatgtgtttcttactaaataaaagtaacccaagataaccgtcatcaaataaactaacgatcttacaactttatgcatcaa |
113 |
Q |
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| T |
60875 |
aaagtttcttctaataaaatcatgtgtttcttactaaagaaaagtaacccaagataaccgtcatcaaataa--------tcttacaactttatgcatcaa |
60784 |
T |
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| Q |
114 |
aacttcgtttgacaaattcgaagaacatgagaaagagctcattgcacttaataaaatttgtagccacaagaaaaggaacatcaaattttttccggttgat |
213 |
Q |
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| T |
60783 |
aacttcgtttgacaaattcaaagaacatgagaaagagctcattgcacttaataaaatttgtagccacaagaaaaggaacatgaaattttttccggttgat |
60684 |
T |
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| Q |
214 |
tggttggaacccaaatggatgacattgaactttggtgatattaacgatattgtctttatctcttacataattaac------tatgctgtcataaaaaata |
307 |
Q |
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| T |
60683 |
tggttggaacccaaatggatgacattgaactttggtgatattgaagatattgtctttatcttttacataattaactatatatatgctgtcataaaaaata |
60584 |
T |
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| Q |
308 |
atttattttaggagaatgttaac |
330 |
Q |
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| T |
60583 |
atttattttaggagaatgttaac |
60561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 68207 - 67893
Alignment:
| Q |
14 |
aaagtttcttctaataaaatcatgtgtttcttactaaataaaagtaacccaagataaccgtcatcaaataaactaacgatcttacaactttatgcatcaa |
113 |
Q |
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| T |
68207 |
aaagtttcttctaataaaatcatgtgtttcttactaaagaaaagtaacccaagataaccgtcatcaaataa--------tcttacaactttatgcatcaa |
68116 |
T |
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| Q |
114 |
aacttcgtttgacaaattcgaagaacatgagaaagagctcattgcacttaataaaatttgtagccacaagaaaaggaacatcaaattttttccggttgat |
213 |
Q |
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| T |
68115 |
aacttcgtttgacaaattcaaagaacatgagaaagagctcattgcacttaataaaatttgtagccacaagaaaaggaacatgaaattttttccggttgat |
68016 |
T |
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| Q |
214 |
tggttggaacccaaatggatgacattgaactttggtgatattaacgatattgtctttatctcttacataattaac------tatgctgtcataaaaaata |
307 |
Q |
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| T |
68015 |
tggttggaacccaaatggatgacattgaactttggtgatattgaagatattgtctttatcttttacataattaactatatatatgctgtcataaaaaata |
67916 |
T |
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| Q |
308 |
atttattttaggagaatgttaac |
330 |
Q |
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| T |
67915 |
atttattttaggagaatgttaac |
67893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 60450 - 60317
Alignment:
| Q |
355 |
atttaactttttaattccttaaccagtatcccggatatattggttaacaaaatcctttattttaaccattcataaaatattttctttcgtaaaaatacac |
454 |
Q |
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|||| |||||| ||||| |||| || |||| |||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
60450 |
attttacttttgaattcattaatcaatatctcggatacattagttaacaaaaccctttattttaactattcataaaatattttctttcgtaaaaatacac |
60351 |
T |
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| Q |
455 |
taacgtcacccatactcaatgtcacctaagtatt |
488 |
Q |
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| T |
60350 |
taacgtcacccatactcaatgtcacctaagtatt |
60317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 488
Target Start/End: Complemental strand, 67782 - 67649
Alignment:
| Q |
355 |
atttaactttttaattccttaaccagtatcccggatatattggttaacaaaatcctttattttaaccattcataaaatattttctttcgtaaaaatacac |
454 |
Q |
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|||| |||||| ||||| |||| || |||| |||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
67782 |
attttacttttgaattcattaatcaatatctcggatacattagttaacaaaaccctttattttaactattcataaaatattttctttcgtaaaaatacac |
67683 |
T |
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| Q |
455 |
taacgtcacccatactcaatgtcacctaagtatt |
488 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
67682 |
taacgtcacccatactcaatgtcacctaagtatt |
67649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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