View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_low_12 (Length: 357)
Name: NF12970_low_12
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 3131605 - 3131945
Alignment:
| Q |
1 |
cagctacagttttatcatcattaacacgaacatagaacggtttagcttcttttggataactgtgaattataactggttttttgtagatggcatcaactag |
100 |
Q |
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| T |
3131605 |
cagctacagttttatcatcattaacacgaacatagaacggtttagcttcttttggataactgtgaattataactggttttttgtagatggcatcaactag |
3131704 |
T |
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| Q |
101 |
atagctgcaacgacacagacataacaataagtaataaaagtggtgaaggcaatacttttactgtgttgaaaatcaacaaatccagaacatgaggataata |
200 |
Q |
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| T |
3131705 |
atagctgcaacgacacagacataacaataagtaataaaagtggtgaaggcaatacttctactgtgttgaaaatcaacaaatccagaacatgaggataata |
3131804 |
T |
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| Q |
201 |
tcgacataccttaggtgatcggaagtgagtttaagacctgaatcaaacttcgttttagatttctcatcttcaacctatgaggagaaccagtaacgcaaac |
300 |
Q |
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| T |
3131805 |
tcgacataccttaggtgatcggaagtgagtttaagacctgaatcaaacttcgttttagatttctcatcttcagcctatgaggagaaccagtaacgcaaac |
3131904 |
T |
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| Q |
301 |
aaacaaacatatttgttatctttgagataaaaagtaaatca |
341 |
Q |
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| T |
3131905 |
aaacaaacatatttgttatctttgagataaaaagtaaatca |
3131945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 3128051 - 3128144
Alignment:
| Q |
10 |
ttttatcatcattaacacga----acatagaacggtttagcttcttttggataactgtgaattataactggttttttgtagatggcatcaactaga |
101 |
Q |
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| T |
3128051 |
ttttatcatcattaacacgaacgaacatagaatggtttagcttcttttggataac--tcaattataagtggctttttgtagatggcatcagctaga |
3128144 |
T |
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