View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12970_low_18 (Length: 236)

Name: NF12970_low_18
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12970_low_18
NF12970_low_18
[»] chr7 (10 HSPs)
chr7 (108-219)||(47464094-47464205)
chr7 (42-111)||(47463903-47463972)
chr7 (61-105)||(9877302-9877346)
chr7 (67-105)||(3766808-3766846)
chr7 (67-105)||(38889528-38889566)
chr7 (64-105)||(15238883-15238924)
chr7 (66-102)||(9233800-9233836)
chr7 (66-102)||(12364745-12364781)
chr7 (67-111)||(23817185-23817229)
chr7 (65-105)||(44616597-44616637)
[»] chr4 (6 HSPs)
chr4 (64-105)||(52798272-52798313)
chr4 (62-105)||(45849039-45849082)
chr4 (67-105)||(3036090-3036128)
chr4 (68-105)||(37251111-37251148)
chr4 (67-104)||(43481075-43481112)
chr4 (63-111)||(53376708-53376756)
[»] chr1 (7 HSPs)
chr1 (66-111)||(26550490-26550535)
chr1 (66-105)||(44732629-44732668)
chr1 (67-105)||(48897152-48897190)
chr1 (65-105)||(1570227-1570267)
chr1 (61-105)||(15775730-15775774)
chr1 (65-105)||(35605658-35605698)
chr1 (65-105)||(46965735-46965775)
[»] chr8 (13 HSPs)
chr8 (61-105)||(94546-94590)
chr8 (66-105)||(8034447-8034486)
chr8 (67-105)||(26280819-26280857)
chr8 (67-105)||(33617969-33618007)
chr8 (67-105)||(36540284-36540322)
chr8 (67-105)||(37717360-37717398)
chr8 (67-105)||(42880945-42880983)
chr8 (68-105)||(38402249-38402286)
chr8 (61-105)||(12260-12304)
chr8 (65-105)||(17027915-17027955)
chr8 (65-105)||(17558351-17558391)
chr8 (65-105)||(34472292-34472332)
chr8 (69-105)||(43856417-43856453)
[»] chr3 (8 HSPs)
chr3 (63-111)||(32256583-32256631)
chr3 (67-105)||(1743832-1743870)
chr3 (69-111)||(52309139-52309181)
chr3 (67-105)||(52974088-52974126)
chr3 (67-111)||(11820001-11820045)
chr3 (65-105)||(34847538-34847578)
chr3 (67-111)||(40723689-40723733)
chr3 (65-105)||(44652017-44652057)
[»] scaffold0028 (1 HSPs)
scaffold0028 (66-105)||(112104-112143)
[»] chr6 (9 HSPs)
chr6 (66-105)||(31802049-31802088)
chr6 (67-105)||(13732809-13732847)
chr6 (67-105)||(27094842-27094880)
chr6 (68-105)||(4326213-4326250)
chr6 (72-105)||(7418280-7418313)
chr6 (64-105)||(7545323-7545364)
chr6 (65-105)||(10934594-10934634)
chr6 (65-105)||(15091443-15091483)
chr6 (65-105)||(30885605-30885645)
[»] chr2 (12 HSPs)
chr2 (66-105)||(39408725-39408764)
chr2 (67-105)||(5062294-5062332)
chr2 (64-105)||(8250336-8250377)
chr2 (66-111)||(28153171-28153216)
chr2 (64-105)||(32609222-32609263)
chr2 (64-105)||(38557258-38557299)
chr2 (68-105)||(43214354-43214391)
chr2 (66-111)||(44021070-44021115)
chr2 (67-111)||(1260182-1260226)
chr2 (65-105)||(18694780-18694820)
chr2 (65-105)||(22653679-22653719)
chr2 (65-105)||(25857330-25857370)
[»] chr5 (7 HSPs)
chr5 (67-105)||(5900289-5900327)
chr5 (63-105)||(25648120-25648162)
chr5 (67-105)||(26912830-26912868)
chr5 (67-105)||(40091474-40091512)
chr5 (64-105)||(17545207-17545248)
chr5 (65-105)||(6558796-6558836)
chr5 (65-105)||(12891552-12891592)
[»] scaffold0121 (1 HSPs)
scaffold0121 (65-105)||(46521-46561)
[»] scaffold0100 (1 HSPs)
scaffold0100 (61-105)||(45875-45919)
[»] scaffold0024 (1 HSPs)
scaffold0024 (65-105)||(59778-59818)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 47464094 - 47464205
Alignment:
Q  108 tataaaagtttagctccttttattagacttgatcgtattggttgctttaaacctgatttgcatatttgaatttattttttatgatgtactttctcatact 207  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  47464094 tataaaagtttagccccttttattagacttcatcgtattggttgctttaaacctgatttacatatttgaatttattttttatgatgtactttcacatact 47464193  T
Q  208 aaatgtatatgc 219  Q
    ||||||||||||    
T  47464194 aaatgtatatgc 47464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 47463903 - 47463972
Alignment:
Q  42 cttcaattagaattttaacattaatatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    |||||||||||||||| ||||||||||| ||||||||||||| || |||||||  |||||||||| ||||    
T  47463903 cttcaattagaattttgacattaatatcaccgtgagcttaactcagttggtagaaatattgcatgttata 47463972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 9877346 - 9877302
Alignment:
Q  61 attaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||||||| | || ||||||||||||||||||    
T  9877346 attaatatccccgtgagcttagctcagttggtagggatattgcat 9877302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 3766808 - 3766846
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  3766808 atccccgtgagcttaactcagttggtagggatattgcat 3766846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 38889566 - 38889528
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  38889566 atccccgtgagcttaactcagttggtagggatattgcat 38889528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 15238883 - 15238924
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  15238883 aatatccccgtgagcttagctcagttggtagggatattgcat 15238924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 9233836 - 9233800
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattg 102  Q
    |||||||||||||||||| || |||||||||||||||    
T  9233836 tatccccgtgagcttaactcagttggtagggatattg 9233800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 12364745 - 12364781
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattg 102  Q
    |||||||||||||||||| || |||||||||||||||    
T  12364745 tatccccgtgagcttaactcacttggtagggatattg 12364781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 23817185 - 23817229
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||| ||||||||||| || ||||||||||||||||||| ||||    
T  23817185 atccctgtgagcttaactcaattggtagggatattgcatgttata 23817229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 44616597 - 44616637
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  44616597 atatccccgtgagcttagctcagttggtagggatattgcat 44616637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 52798272 - 52798313
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  52798272 aatatccccgtgagcttaactcagttggtagggatattgcat 52798313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 45849039 - 45849082
Alignment:
Q  62 ttaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  45849039 ttaatatccccgtgagcttagctcagttggtagggatattgcat 45849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 3036128 - 3036090
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  3036128 atccccgtgagcttaactcagttggtagggatattgcat 3036090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 37251111 - 37251148
Alignment:
Q  68 tccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||| || ||||||||||||||||||    
T  37251111 tccccgtgagcttaactcagttggtagggatattgcat 37251148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 43481112 - 43481075
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgca 104  Q
    ||||||||||||||||| || |||||||||||||||||    
T  43481112 atccccgtgagcttaactcagttggtagggatattgca 43481075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 53376756 - 53376708
Alignment:
Q  63 taatatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||||||| ||||||| | || ||||||||||||||||||| ||||    
T  53376756 taatatccccgcgagcttagctcaattggtagggatattgcatgttata 53376708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 26550490 - 26550535
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  26550490 tatccccgtgagcttaactcagttggtagggatattgcatactata 26550535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 44732629 - 44732668
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  44732629 tatccccgtgagcttaactcagttggtagggatattgcat 44732668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 48897190 - 48897152
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  48897190 atccccgtgagcttaactcatttggtaggaatattgcat 48897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 1570267 - 1570227
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  1570267 atatccccgtgagcttagctcagttggtagggatattgcat 1570227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 15775730 - 15775774
Alignment:
Q  61 attaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||| ||| |||||||||||||| || ||||||||||||||||||    
T  15775730 attattattcccgtgagcttaactcaattggtagggatattgcat 15775774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 35605698 - 35605658
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  35605698 atatccccgtgagcttagctcagttggtagggatattgcat 35605658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 46965735 - 46965775
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  46965735 atatccccgtgagcttagctcagttggtagggatattgcat 46965775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 94590 - 94546
Alignment:
Q  61 attaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||||||| | || ||||||||||||||||||    
T  94590 attaatatccccgtgagcttagctcagttggtagggatattgcat 94546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 8034486 - 8034447
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  8034486 tatccccgtgagcttaactcagttggtagggatattgcat 8034447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 26280857 - 26280819
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  26280857 atccccgtgagcttaactcagttggtagggatattgcat 26280819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 33617969 - 33618007
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  33617969 atccccgtgagcttaactcagttggtagggatattgcat 33618007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 36540284 - 36540322
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  36540284 atccccgtgagcttaactcagttggtagggatattgcat 36540322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 37717360 - 37717398
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  37717360 atccccgtgagcttaactcagttggtagggatattgcat 37717398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 42880945 - 42880983
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  42880945 atccccgtgagcttaactcagttggtagggatattgcat 42880983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 38402249 - 38402286
Alignment:
Q  68 tccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||| || ||||||||||||||||||    
T  38402249 tccccgtgagcttaactcagttggtagggatattgcat 38402286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 12304 - 12260
Alignment:
Q  61 attaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||| |||||||||||||||| | || ||||||||||||||||||    
T  12304 attattatccccgtgagcttagctcagttggtagggatattgcat 12260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 17027955 - 17027915
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  17027955 atatccccgtgagcttagctcagttggtagggatattgcat 17027915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 17558391 - 17558351
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  17558391 atatccccgtgagcttagctcagttggtagggatattgcat 17558351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 34472292 - 34472332
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||| |||||||||||||| || ||||||||||||||||||    
T  34472292 atattcccgtgagcttaactcagttggtagggatattgcat 34472332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 43856453 - 43856417
Alignment:
Q  69 ccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||| || ||||||||||||||||||    
T  43856453 ccccgtgagcttaactcagttggtagggatattgcat 43856417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 32256631 - 32256583
Alignment:
Q  63 taatatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||||||||||||||| | || ||||||||||||||||||| ||||    
T  32256631 taatatccccgtgagcttagctcagttggtagggatattgcatgttata 32256583  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 1743870 - 1743832
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  1743870 atccccgtgagcttaactcaattggtagggatattgcat 1743832  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 52309181 - 52309139
Alignment:
Q  69 ccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||||||||||| || |||||||||||||||||| |||||    
T  52309181 ccccgtgagcttaactcagttggtagggatattgcatactata 52309139  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 52974126 - 52974088
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  52974126 atccccgtgagcttaactcagttggtagggatattgcat 52974088  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 11820001 - 11820045
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||    
T  11820001 atccccgtgagcttagctcagttggtagggatattgcatgttata 11820045  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 34847538 - 34847578
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  34847538 atatccccgtgagcttaattcagttggtagggatattgcat 34847578  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 40723733 - 40723689
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||| ||||||||| || ||||||||||||||||||| ||||    
T  40723733 atccccgagagcttaactcagttggtagggatattgcatgttata 40723689  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 44652057 - 44652017
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  44652057 atatccccgtgagcttagctcagttggtagggatattgcat 44652017  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 112104 - 112143
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  112104 tatccccgtgagcttaactcagttggtagggatattgcat 112143  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 31802049 - 31802088
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  31802049 tatccccgtgagcttaactcagttggtagggatattgcat 31802088  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 13732809 - 13732847
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  13732809 atccccgtgagcttaactcagttggtagggatattgcat 13732847  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 27094880 - 27094842
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  27094880 atccccgtgagcttaactcagttggtagggatattgcat 27094842  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 4326213 - 4326250
Alignment:
Q  68 tccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  4326213 tccccgtgagcttaacccagttggaagggatattgcat 4326250  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 7418280 - 7418313
Alignment:
Q  72 cgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||| |||||||||||||||||||||    
T  7418280 cgtgagcttaactcatttggtagggatattgcat 7418313  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 7545323 - 7545364
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  7545323 aatatccccgtgagcttagctcagttggtagggatattgcat 7545364  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 10934594 - 10934634
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  10934594 atatccccgtgagcttagctcagttggtagggatattgcat 10934634  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 15091443 - 15091483
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  15091443 atatccccgtgagcttagctcagttggtagggatattgcat 15091483  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 30885645 - 30885605
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  30885645 atatccccgtgagcttagctcagttggtagggatattgcat 30885605  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 39408764 - 39408725
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  39408764 tatccccgtgagcttaactcagttggtagggatattgcat 39408725  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 5062294 - 5062332
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  5062294 atccccgtgagcttaactcagttggtagggatattgcat 5062332  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 8250377 - 8250336
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  8250377 aatatccccgtgagcttagctcagttggtagggatattgcat 8250336  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 28153216 - 28153171
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    |||||| ||||||||||| || ||||||||||||||||||| ||||    
T  28153216 tatcccagtgagcttaactcagttggtagggatattgcatgttata 28153171  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 32609263 - 32609222
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||| ||||||||||||| || ||||||||||||||||||    
T  32609263 aatatctccgtgagcttaactcagttggtagggatattgcat 32609222  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 38557299 - 38557258
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  38557299 aatatccccgtgagcttaactcagttggtagggatatggcat 38557258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 43214354 - 43214391
Alignment:
Q  68 tccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||| || ||||||||||||||||||    
T  43214354 tccccgtgagcttaactcagttggtagggatattgcat 43214391  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 44021070 - 44021115
Alignment:
Q  66 tatccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    |||||||||||||||||| || |||||||| |||||||||| ||||    
T  44021070 tatccccgtgagcttaactcagttggtaggaatattgcatgttata 44021115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 1260182 - 1260226
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcatgctata 111  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||    
T  1260182 atccccgtgagcttagctcagttggtagggatattgcatgttata 1260226  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 18694780 - 18694820
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  18694780 atatccccgtgagcttagctcagttggtagggatattgcat 18694820  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 22653719 - 22653679
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  22653719 atatccccgtgagcttagctcagttggtagggatattgcat 22653679  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 25857370 - 25857330
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  25857370 atatccccgtgagcttagctcagttggtagggatattgcat 25857330  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 5900289 - 5900327
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  5900289 atccccgtgagcttaactcagttggtagggatattgcat 5900327  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 25648162 - 25648120
Alignment:
Q  63 taatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||||| | || ||||||||||||||||||    
T  25648162 taatatccccgtgagcttagctcagttggtagggatattgcat 25648120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 26912830 - 26912868
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  26912830 atccccgtgagcttaactcaattggtagggatattgcat 26912868  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 40091474 - 40091512
Alignment:
Q  67 atccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  40091474 atccccgtgagcttaactcagttggtagggatattgcat 40091512  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 17545248 - 17545207
Alignment:
Q  64 aatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    |||||||||||||||||| | || ||||||||||||||||||    
T  17545248 aatatccccgtgagcttagctcagttggtagggatattgcat 17545207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 6558796 - 6558836
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  6558796 atatccccgtgagcttagctcaattggtagggatattgcat 6558836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 12891552 - 12891592
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  12891552 atatccccgtgagcttagctcagttggtagggatattgcat 12891592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 46521 - 46561
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  46521 atatccccgtgagcttagctcagttggtagggatattgcat 46561  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 45875 - 45919
Alignment:
Q  61 attaatatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||| ||||||||||||||| | || ||||||||||||||||||    
T  45875 attaagatccccgtgagcttagctcagttggtagggatattgcat 45919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 59778 - 59818
Alignment:
Q  65 atatccccgtgagcttaacccatttggtagggatattgcat 105  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  59778 atatccccgtgagcttagctcagttggtagggatattgcat 59818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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