View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_low_2 (Length: 566)
Name: NF12970_low_2
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 272 - 547
Target Start/End: Complemental strand, 25743866 - 25743589
Alignment:
| Q |
272 |
tcatacaacaacacaaaataaaagacaagtcagttatcctaaaatcactagattgaaaatctacctttcaacgctaggggcataggttcgatactcttgc |
371 |
Q |
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| T |
25743866 |
tcatacaacaacacaaaataaaagacaagtcagttatcctagaatcacttgattgaaaatctacctttcaacgctaggggcataggttcgttactcttgc |
25743767 |
T |
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| Q |
372 |
acaccggaaaaagacagtactcttactgccgttgtcaattcagtacattacnnnnnnnnacagtgataacttcttctttttgggacaaagatgg---tga |
468 |
Q |
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| T |
25743766 |
acaccggaaaaagacagtactcttactgccgttgtcaattcagtacattac-tttttttacagtgataacttcttctttttgggacaaagatggtgatga |
25743668 |
T |
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| Q |
469 |
caacaattcaagactaactaatnnnnnnncaacatgataactaccaactttgtcatgagaataagctggctctcctacc |
547 |
Q |
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| T |
25743667 |
caacaattcaagactaactaataaaaaaacaacatgataactaccaactttgtcatgagaataagctggctctcctacc |
25743589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 25744129 - 25743944
Alignment:
| Q |
9 |
gaagaatatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaacataat |
108 |
Q |
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| T |
25744129 |
gaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaacataat |
25744030 |
T |
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| Q |
109 |
cagtgaagtcatagaaggactatagatttaattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
194 |
Q |
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| T |
25744029 |
cagtgaagtcatagaaggactatagttttcattcatttttagtttcttacacaacaaaacatgatgaaactttgacactggttagt |
25743944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 25740429 - 25740326
Alignment:
| Q |
9 |
gaagaatatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaacataat |
108 |
Q |
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| T |
25740429 |
gaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaataactgcagacaacatgttaacataat |
25740330 |
T |
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| Q |
109 |
cagt |
112 |
Q |
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|||| |
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| T |
25740329 |
cagt |
25740326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 17383327 - 17383269
Alignment:
| Q |
16 |
atgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaac |
74 |
Q |
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| T |
17383327 |
atgtatggaatgagtagtgatgtaagaatgtttaccttccaatttgtgcgatccaaaac |
17383269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 547
Target Start/End: Complemental strand, 25740123 - 25740031
Alignment:
| Q |
455 |
gacaaagatggtgacaacaattcaagactaactaatnnnnnnncaacatgataactaccaactttgtcatgagaataagctggctctcctacc |
547 |
Q |
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| T |
25740123 |
gacaaagacagtgacaagaattcaagactaaccactaaaaaaacaacatgataacaaccgacttcgtcatgagaataagctggctctcctacc |
25740031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 8534919 - 8534851
Alignment:
| Q |
9 |
gaagaatatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
78 |
Q |
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| T |
8534919 |
gaagaaaatgtatggaatgagtagtgatgtaagaa-gtttgtcttccagtttgtgcgatccaaaaccaac |
8534851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 36450133 - 36450074
Alignment:
| Q |
19 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac |
78 |
Q |
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| T |
36450133 |
tatggaatgagtagtgatgtaagaatgtttgtcttccagtatgtgcgatccaaaaccaac |
36450074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 12510115 - 12510035
Alignment:
| Q |
10 |
aagaatatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcag |
90 |
Q |
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| T |
12510115 |
aagaaaatgtagggaatgagtagtgatgtgaaaatgttggtcttccagtttgtacgatccaaaatcaacaaataactgcag |
12510035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 12513942 - 12513869
Alignment:
| Q |
16 |
atgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgca |
89 |
Q |
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| T |
12513942 |
atgtatggaacgagtagtgatgtgaaagtgttggtctcccagtttgtacgatccaaactcaacagataactgca |
12513869 |
T |
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