View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12970_low_8 (Length: 423)
Name: NF12970_low_8
Description: NF12970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12970_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 50718014 - 50717819
Alignment:
| Q |
1 |
tgtaggacttgaaagtataacatagaaagtggacctttatgttgttgaaaaggtgccataaaccaattacaaagaaagcaaaccctaaaatttcatgtcc |
100 |
Q |
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| T |
50718014 |
tgtaggacttgaaagtataacatagaaagtggagctttatgttgttgaaaaggtgccataaaccaattacaaagaaagcaaaccctaaaatttcatgtcc |
50717915 |
T |
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| Q |
101 |
ctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattatttagctaagtcaatgtccttgtgtcaccaatagcaatgttaagc |
196 |
Q |
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| T |
50717914 |
ctccatagtgcctagctattaggtaaaaacacaacacacgaaaaagaattatttagctaagtcaatgtccttgtgtcaccaatagcaatgttaagc |
50717819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 231 - 407
Target Start/End: Complemental strand, 50717819 - 50717635
Alignment:
| Q |
231 |
ctctaaaataaaagatgatttatagagttggctctttaatttgtgtatcaaagatattaattatgagggataaa-------------gttggttgaggtg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50717819 |
ctctaaaataaaagatgatttatagagttggctcttt-----gtgtatcaaagatattaattatgagggataaataatggggatgaagttggttgaggtg |
50717725 |
T |
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| Q |
318 |
aggatatatagaatgcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaacctccttccacaagggaaaaggttgttgt |
407 |
Q |
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| T |
50717724 |
aggatatatagaatgcaagtgtccgtcgtatatgagagatcacaaaggacaagacatgaaacctccttccacaagggaaaaggttgttgt |
50717635 |
T |
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