View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12971_low_1 (Length: 878)
Name: NF12971_low_1
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12971_low_1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 19 - 878
Target Start/End: Original strand, 21214766 - 21215629
Alignment:
| Q |
19 |
taaatttcattctacagcacttcaactcttcacaacaataaaaaccaattaaactcaaaa-ccaattctcattcttcatagcataatctcaagtgttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21214766 |
taaatttcattctacagcacttcaactcttcacaacaataaagtccaattaaactcaaaaaccaattctctttcttcatagcataatctcaagtgttttg |
21214865 |
T |
|
| Q |
118 |
tttttccaacatggtgcaacaatcacttatatacagctttgtggcgcgtggcacggtgattctggccgagcacaccaacttcaccggaaactttgctgaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
21214866 |
tttttccaacatggtgcaacaatcacttatatacagctttgtggcgcgtggcatggtgattctggccgagcacaccaacttcactggaaacttcgttgaa |
21214965 |
T |
|
| Q |
218 |
atagctttgcaatgtttgcaaagactcccagcaaccaacacaaaattcacttacaacaccgatggtcataccttcaactacctcgcccatgatggattta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21214966 |
atagctttgcaatgtttgcaaagactcccagcaaccaacacaaaattcacttacaacaccgatggtcataccttcaactacctcgcccatgatggattta |
21215065 |
T |
|
| Q |
318 |
gtacttacctcttatcttttt-cttttacataatcactacaatgcgatatatgaagca--gacactagatagatcaaatgcatttacatgtactggtttc |
414 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21215066 |
gtacttacctattatcttttttcttttacataatcactacaatgcgatatatgaggcacagacactagatagatcaaatgcatttacatgtactggtttc |
21215165 |
T |
|
| Q |
415 |
atgtcaaacatcgaacacctcttgggaaatttatgatttgcattctttttctttctaaaattctactatattaatagacttacatgatctattatcttta |
514 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21215166 |
atgtcaaacattgaacacctcgtaggaaatttatgatttgctttctttttctatctaaaattctactatattattagacttacatgatctattatcttta |
21215265 |
T |
|
| Q |
515 |
gcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggaggaa |
614 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21215266 |
gcttactgcgttgttggtgtggagtcttttgatcgccatattgctatggcatttcttgatcgcatcaaggaggattttaccaaaagatatggtggaggaa |
21215365 |
T |
|
| Q |
615 |
aagctgcaacggcaacatctaaaagcttgaataaagaatttgggtactcaagtttataacaattttgtgtatagaaaatgtgtctcaaaatttgaattgc |
714 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21215366 |
aagctgcaacagcaacatctaaaagcttgaataaagaatttgggtactcaagtttataacaattttgtgtatagaaaatgtgtctcaaaagttgaattgc |
21215465 |
T |
|
| Q |
715 |
attaattaacaagaaatttttgttgtatatatgcatggtttagaccgaaattgaaggagcatatggaatattgtgtggaacatccagaagaggttagcaa |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21215466 |
attaattaacaagaaatttttgttgtatatatgcatggtttagaccgaaattgaaggagcatatgcaatattgtgtggaacatccagaagaggttagcaa |
21215565 |
T |
|
| Q |
815 |
acttgcgaaagtaaaagctcaggtttctcaagttcaagatgttatgttggaaaatattgatcag |
878 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21215566 |
acttgcgaaagtaaaagctcaggtttctcaagttcaagatgttatgttggaaaatattgatcag |
21215629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 753 - 871
Target Start/End: Complemental strand, 7535966 - 7535848
Alignment:
| Q |
753 |
tttagaccgaaattgaaggagcatatggaatattgtgtggaacatccagaagaggttagcaaacttgcgaaagtaaaagctcaggtttctcaagttcaag |
852 |
Q |
| |
|
|||||||| || ||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |||||| |||| ||| |
|
|
| T |
7535966 |
tttagaccaaagttgaaggagcaaatgcaatattgtgtggaacatccggaggaggttagcaaacttgctaaagtgaaagctcaagtttctgaagtcaaag |
7535867 |
T |
|
| Q |
853 |
atgttatgttggaaaatat |
871 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
7535866 |
gagttatgatggaaaatat |
7535848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 514 - 662
Target Start/End: Complemental strand, 7536190 - 7536042
Alignment:
| Q |
514 |
agcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
613 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||| | | || ||| | || || |||||||| || || ||||| ||||||| |||||||||||||||||| |
|
|
| T |
7536190 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaggatgattttaataaaagatatggtggagga |
7536091 |
T |
|
| Q |
614 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
662 |
Q |
| |
|
| |||| |||| ||||| ||||||| | || |||||||||||||||| |
|
|
| T |
7536090 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7536042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 753 - 871
Target Start/End: Complemental strand, 7489884 - 7489766
Alignment:
| Q |
753 |
tttagaccgaaattgaaggagcatatggaatattgtgtggaacatccagaagaggttagcaaacttgcgaaagtaaaagctcaggtttctcaagttcaag |
852 |
Q |
| |
|
|||||||| || ||||||||||| || | ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || |||||| |||| ||| |
|
|
| T |
7489884 |
tttagaccaaagttgaaggagcagatacagtattgtgtggaacatccggaggaggttagaaaacttgctaaagtgaaagcacaagtttctgaagtcaaag |
7489785 |
T |
|
| Q |
853 |
atgttatgttggaaaatat |
871 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
7489784 |
gagttatgatggaaaatat |
7489766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 662
Target Start/End: Complemental strand, 7490096 - 7489948
Alignment:
| Q |
514 |
agcttactgcgttgttgctgtggagtcttttgatcgccatattgctatggcctttcttgatcgcatcaaggaggattttaccaaaagatatggtggagga |
613 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||| | | || ||| | || || |||||||| || || || || ||||||| |||| ||||||||||||| |
|
|
| T |
7490096 |
agcttactgtgttgttgcagtggagtctgttggtagacaaattccaatagcttttcttgaacgtattaaagatgattttaataaaaaatatggtggagga |
7489997 |
T |
|
| Q |
614 |
aaagctgcaacggcaacatctaaaagcttgaataaagaatttgggtact |
662 |
Q |
| |
|
| |||| |||| ||||| ||||||| | || |||||||||||||||| |
|
|
| T |
7489996 |
agagctacaacagcaactgctaaaagtcttaacaaagaatttgggtact |
7489948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 765 - 874
Target Start/End: Original strand, 10692569 - 10692678
Alignment:
| Q |
765 |
ttgaaggagcatatggaatattgtgtggaacatccagaagaggttagcaaacttgcgaaagtaaaagctcaggtttctcaagttcaagatgttatgttgg |
864 |
Q |
| |
|
|||||||| |||||| | || ||||| || ||||| || ||| | ||||| ||||| || || ||||||||||||||| ||||| ||| ||| ||| ||| |
|
|
| T |
10692569 |
ttgaaggaacatatgcagtactgtgttgatcatcctgacgagataagcaagcttgcaaaggtgaaagctcaggtttctgaagttaaaggtgtcatgatgg |
10692668 |
T |
|
| Q |
865 |
aaaatattga |
874 |
Q |
| |
|
| |||||||| |
|
|
| T |
10692669 |
agaatattga |
10692678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University