View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12971_low_3 (Length: 432)

Name: NF12971_low_3
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12971_low_3
NF12971_low_3
[»] chr8 (15 HSPs)
chr8 (1-415)||(6425167-6425581)
chr8 (15-267)||(6290399-6290651)
chr8 (15-273)||(6275647-6275905)
chr8 (34-265)||(6353510-6353741)
chr8 (15-270)||(7460563-7460818)
chr8 (17-301)||(6333077-6333361)
chr8 (69-267)||(6371249-6371447)
chr8 (15-274)||(6322508-6322767)
chr8 (26-264)||(6364375-6364613)
chr8 (31-264)||(6392003-6392236)
chr8 (31-265)||(6411167-6411401)
chr8 (120-250)||(6264927-6265057)
chr8 (128-253)||(6452174-6452299)
chr8 (123-253)||(6458262-6458392)
chr8 (340-415)||(6290726-6290801)
[»] chr2 (2 HSPs)
chr2 (126-258)||(42694394-42694526)
chr2 (126-253)||(42687136-42687263)
[»] chr5 (1 HSPs)
chr5 (128-261)||(9603035-9603168)
[»] chr3 (2 HSPs)
chr3 (123-199)||(36743945-36744021)
chr3 (128-196)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 6425167 - 6425581
Alignment:
Q  1 tagaacagaaggtttaaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6425167 tagaacagaaggtttaaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaa 6425266  T
Q  101 ggtaggttttgagtcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtc 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425267 ggtaggtttcgagtcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtc 6425366  T
Q  201 ttcaactcttcttgtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatatttacttaatcatgtcaagttttgagaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425367 ttcaactcttcttgtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatatttacttaatcatgtcaagttttgagaaat 6425466  T
Q  301 aatttatacttaactagacaaataaatatgagtttttgtttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaaga 400  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6425467 aatttatacttaactagacaaataaatatgagtttttctttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaaga 6425566  T
Q  401 gttgcaaacaaagtt 415  Q
    |||||||||||||||    
T  6425567 gttgcaaacaaagtt 6425581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 6290399 - 6290651
Alignment:
Q  15 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagt 114  Q
    |||||||| ||||||||||  ||||| ||||| ||||||||||||||||| ||  |||||||||| ||||||| | ||||   |||   |||||| ||||    
T  6290399 taacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaatttgacgcgccaattgaggtttcgagt 6290498  T
Q  115 caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg 214  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  6290499 caggctcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttcttg 6290598  T
Q  215 tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacattt 267  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  6290599 tctatagtacactaatggagctggtgtttcacttggaaggtatgtctatattt 6290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 6275647 - 6275905
Alignment:
Q  15 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagt 114  Q
    |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||| | |||||||||| ||| ||||||  |||| | | |||   ||    
T  6275647 taacctttcttagctggtttcctgccggttctccctcttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgt 6275746  T
Q  115 caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg 214  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||    
T  6275747 caggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttg 6275846  T
Q  215 tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatattt 273  Q
    ||||||||| || |||||||  ||||||||||||||||| |||||||| ||||||||||    
T  6275847 tctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattt 6275905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 6353510 - 6353741
Alignment:
Q  34 ttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagtcaggctcacccaaatcatt 133  Q
    ||||||| ||||| ||||||||||||||||| ||   ||| ||||| ||||||| | ||||   |||   |||||| |||||||||||||||||||||||    
T  6353510 ttctgccagttcttccccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagtcaggctcacccaaatcatt 6353609  T
Q  134 gtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacaccaatgga 233  Q
    |||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  6353610 gtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagtacactaatgga 6353709  T
Q  234 gccggtgtttcacttggaaggtatgtctacat 265  Q
    ||||||||||||||||||||||||||||||||    
T  6353710 gccggtgtttcacttggaaggtatgtctacat 6353741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 7460563 - 7460818
Alignment:
Q  15 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagt 114  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| | |  | |||||||  ||| ||||||  |||| ||| |||   ||    
T  7460563 taaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggt 7460662  T
Q  115 caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg 214  Q
    | || |||||||| |||||||||||||| |||||||| || || ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  7460663 cgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttg 7460762  T
Q  215 tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttata 270  Q
    ||| |||||||| |||||||| |||||| |||||||||||||||||||||| ||||    
T  7460763 tctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacatatata 7460818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 6333077 - 6333361
Alignment:
Q  17 accttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagtca 116  Q
    ||||||||||||  |||| ||||| ||||||||||||||||||||||||||| |  | |||||||||| ||| ||||||  |||| |   |||   ||||    
T  6333077 accttttttagcatgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtca 6333176  T
Q  117 ggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtc 216  Q
    || |||||||| |||||||| |||||||| ||||||||||| ||| |||| |||||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  6333177 ggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttcttgtc 6333276  T
Q  217 tatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatatttacttaatcatgtcaagttttgagaaata 301  Q
    | ||||| || |||||||| |||||||| ||||||||||| ||||| ||||||||||| |||    |||||| ||||||||||||    
T  6333277 tgtagtagactaatggagctggtgtttcgcttggaaggtacgtctatatttatatttatttatcggtgtcaaattttgagaaata 6333361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 267
Target Start/End: Original strand, 6371249 - 6371447
Alignment:
Q  69 gtgctcgatcctccaagaactggacgactcaaggtaggttttgagtcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattcct 168  Q
    ||||| ||||| |||||||||||||||| ||||  ||  | |  ||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |    
T  6371249 gtgcttgatcccccaagaactggacgacccaagccagcctctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctt 6371348  T
Q  169 tgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacattt 267  Q
    ||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||||||||||||||||    
T  6371349 tgcgctcacccgttccatctcctcttaaagtcttcaactcttcttgtctgtagtagactaatggagctggtgtttcacttagaaggtatgtctacattt 6371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 6322508 - 6322767
Alignment:
Q  15 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaag-gtaggttttgag 113  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||   |||||||||| ||| ||||||  |||| ||  ||  |  |    
T  6322508 taaccttttttagctggtttcctgccggttctgccccttcgagggtaaggcaaggtgtcggatcctccaataacgggacgagccaagtgtgcgtactt-g 6322606  T
Q  114 tcaggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttctt 213  Q
    ||||| |||||||| |||||||| |||||||| |||||||| || ||   |||||||||||  ||  ||||||||||||||||||||||||| |||||||    
T  6322607 tcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttctt 6322706  T
Q  214 gtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatattta 274  Q
     ||||||||| || |||||||| |||||||||||||||||||||||||| |||| ||||||    
T  6322707 ctctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttattta 6322767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 6364375 - 6364613
Alignment:
Q  26 agctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagtcaggctcaccc 125  Q
    ||||| ||| ||||| |||||||| |||||||||||||| | |||||| |||||||||| ||| ||||||  |||  |||  ||   |||    ||||||    
T  6364375 agctgctttcctgccggttctccctcttcgagggtaagggagggtgctagatcctccaacaacaggacgagccaaactagcgttcttgtccacatcaccc 6364474  T
Q  126 aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtaca 225  Q
    ||||||||||||||||| |||||||| || |||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||| ||||| |    
T  6364475 aaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttcttgtctgtagtaga 6364574  T
Q  226 ccaatggagccggtgtttcacttggaaggtatgtctaca 264  Q
    | || ||||| ||||||||||||||||||||||||||||    
T  6364575 ctaaaggagctggtgtttcacttggaaggtatgtctaca 6364613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 6392003 - 6392236
Alignment:
Q  31 gttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagtcaggctcacccaaatc 130  Q
    |||||||||| ||||| ||||||||||||||||||||||   | ||||| |||||||||||||||  ||||  ||| |||  ||| || | |||||||||    
T  6392003 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 6392102  T
Q  131 attgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacaccaat 230  Q
    |||||||||||| |||||||| || || ||||||||||| ||||||||  ||||||||||||||||||| ||||| ||||||||||| |||||||  |||    
T  6392103 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagtacagtaat 6392202  T
Q  231 ggagccggtgtttcacttggaaggtatgtctaca 264  Q
    ||||| |||||||| ||| ||||||||| |||||    
T  6392203 ggagctggtgtttcccttagaaggtatgcctaca 6392236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 31 - 265
Target Start/End: Original strand, 6411167 - 6411401
Alignment:
Q  31 gttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgactcaaggtaggttttgagtcaggctcacccaaatc 130  Q
    |||||||||| ||||| |||||||||||||||||||||| |   ||||| |||||||||||||||  ||||  |||  ||  ||| || | |||||||||    
T  6411167 gttttctgccagttcttccccttcgagggtaaggcaaggcggctgatcccccaagaactggacgatacaagcaaggactttcgtctggttgacccaaatc 6411266  T
Q  131 attgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacaccaat 230  Q
    |||||||||||| |||||||| || || |||||| |||| ||||||||  ||||||||||||||||||||||||| |||||||   | |||||||| |||    
T  6411267 attgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtagtacactaat 6411366  T
Q  231 ggagccggtgtttcacttggaaggtatgtctacat 265  Q
    ||    |||| || |||||||||||||| ||||||    
T  6411367 ggttgtggtgcttgacttggaaggtatgcctacat 6411401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 6264927 - 6265057
Alignment:
Q  120 tcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctat 219  Q
    ||||||||||||||||| ||||| |||||||| |  || |||||||| |||||||| ||  |||||||||||||||||||||||||||||  ||||||||    
T  6264927 tcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctat 6265026  T
Q  220 agtacaccaatggagccggtgtttcacttgg 250  Q
    |||| || | |||||| ||||||||||||||    
T  6265027 agtagacaagtggagcaggtgtttcacttgg 6265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 6452174 - 6452299
Alignment:
Q  128 atcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacacc 227  Q
    |||||| || ||||| ||||| || ||||| |||||||| ||||| |||||  ||||||||||||||| | ||| ||||||||||| |||| |||         
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgattt 6452273  T
Q  228 aatggagccggtgtttcacttggaag 253  Q
    |||||||| ||||||| |||||||||    
T  6452274 aatggagctggtgtttgacttggaag 6452299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 6458262 - 6458392
Alignment:
Q  123 cccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagt 222  Q
    ||||||||||| || | ||| |||||||| |  || |||  ||| |||||||||||  ||||||||||||||| ||||| ||||||||||| |||||| |    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataat 6458361  T
Q  223 acaccaatggagccggtgtttcacttggaag 253  Q
         |||||||| ||||||| |||||||||    
T  6458362 gatttaatggagctggtgtttgacttggaag 6458392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 6290726 - 6290801
Alignment:
Q  340 ttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaagagttgcaaacaaagtt 415  Q
    |||||||||| || || |||||||| ||| ||||||| ||||   ||||||||| ||| |||||||||||||||||    
T  6290726 ttaccttgttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaagtt 6290801  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 42694394 - 42694526
Alignment:
Q  126 aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtaca 225  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||| | ||||| ||||||| |||||| |  |    
T  42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatgga 42694493  T
Q  226 ccaatggagccggtgtttcacttggaaggtatg 258  Q
    | |||||||||||||||||||| ||||| ||||    
T  42694494 ctaatggagccggtgtttcactaggaagatatg 42694526  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 42687263 - 42687136
Alignment:
Q  126 aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtaca 225  Q
    ||||||||||||||||||||||| |||||||||||   |  ||||||||||||| |||||||||| |||||| | | ||| ||||||| |||||| |  |    
T  42687263 aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatacttga 42687164  T
Q  226 ccaatggagccggtgtttcacttggaag 253  Q
    | | |||||  |||||||||||||||||    
T  42687163 ctagtggagatggtgtttcacttggaag 42687136  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 9603168 - 9603035
Alignment:
Q  128 atcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttgtctatagtacacc 227  Q
    ||||||||||||||| |||||||| |  ||||||||||| || || | |||  | ||||||||||||| | | | ||| ||||||||||| ||||| ||     
T  9603168 atcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtctgtagtagact 9603069  T
Q  228 aatggagccggtgtttcacttggaaggtatgtct 261  Q
    |||||||| ||||||| ||||||||| |||||||    
T  9603068 aatggagctggtgtttgacttggaagatatgtct 9603035  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 36744021 - 36743945
Alignment:
Q  123 cccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagt 199  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||  |||| | || |||||||||| ||||||||    
T  36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 36743945  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 35722372 - 35722304
Alignment:
Q  128 atcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaa 196  Q
    ||||||||||||||| ||||||||||| || ||  ||| ||| |||||||||| ||||| |||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa 35722304  T

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