View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12971_low_4 (Length: 399)
Name: NF12971_low_4
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12971_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 381
Target Start/End: Complemental strand, 1348032 - 1347675
Alignment:
| Q |
24 |
gcactgcttcttccgtcgccggcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggt |
123 |
Q |
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| T |
1348032 |
gcactgcttcttccgtcgccgtcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggt |
1347933 |
T |
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| Q |
124 |
tgcacctcctcttcgtctctctgctcttccaaacgaagaaggtggtgaactcaataccttccccgctctaccttctctccctcaggtatctctctcaaac |
223 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1347932 |
tgctcctcctcttcgtctctctgctcttccaaacgaagacggtggtgaactcaataccttccctgctctaccttctctccctcaggtatctctctcaaac |
1347833 |
T |
|
| Q |
224 |
aattcttctcttttgattccatttttacctttttattgtgtttgattctgcggtaacaataattgatttttattgaatttaattgaaatgtgaattcaag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347832 |
aattcttctcttttgattccatttttacctttttattgtgtttgattctgcggtaacaataattgatttttattgaatttaattgaaatgtgaattcaag |
1347733 |
T |
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| Q |
324 |
tttaagtgatttatgtttcaatacatgcatttaaaagtgagtgatttcaaattcatgt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1347732 |
tttaagtgatttatgtttcaatacatgcatttaaaagtgagtgagttcaaattcatgt |
1347675 |
T |
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