View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12971_low_5 (Length: 398)
Name: NF12971_low_5
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12971_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 7801556 - 7801948
Alignment:
| Q |
1 |
cataacaagttttgtagtatctaacacagaactttgttttcttgtggttatgagatttttctggtagtatctaacttaattgcttccgtattatgttttt |
100 |
Q |
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| T |
7801556 |
cataacaagttttgtagtatctaacacagaactttgttttcttgtggttatgagatttttctggtagtatctaacttaattgctttcgtattatgttttt |
7801655 |
T |
|
| Q |
101 |
gtcaatcaattcatttctgagttttgttatgctaaatttatacccttatcttgctcttgtagattgatcggtataaatatataactaggtcaattggtag |
200 |
Q |
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| T |
7801656 |
gtcaatcaattcatttctgagttttgttatgctaaatttatacccttatcttgctcttgtagattgatcggtataaatatataactaggtcaattggtag |
7801755 |
T |
|
| Q |
201 |
tagaggaaacctaagtagttgttagtttcaattcaattagtgatattttggagtttgatatgcttttcagtttttcaattcactcaatctcaattttcgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7801756 |
tagaggaaacctaagtagttgttagtttcaattcaattagtgatattttggagtttgatatgcttttcagtttttcaattcactcaatctcaattttcgt |
7801855 |
T |
|
| Q |
301 |
tgtgttatgttggtgctcaatctgttttgttgtgttggcgttaaatcttttcattctcagtaatgttgtctttgtgctggtgttcatctcact |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7801856 |
tgtgttatgttggtgctcaatctgttttgttgtgttggcgttaaatcttttcattctcagtaatgttgtctttgtgctggtgttcatctcact |
7801948 |
T |
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