View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12971_low_6 (Length: 383)
Name: NF12971_low_6
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12971_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 63 - 366
Target Start/End: Complemental strand, 34519898 - 34519593
Alignment:
| Q |
63 |
atcatgttgcatgtttttaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
162 |
Q |
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| T |
34519898 |
atcatgttgcatgttttgaagagatgtccacaagggcttgaccaaaccattaatttcttctatcctaataagcaaaaatgattaattttcttctattgtt |
34519799 |
T |
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| Q |
163 |
t--gcttattttgaagcaaaacaaaggaccaatttcttctaaaagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
260 |
Q |
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| T |
34519798 |
tttgcttattttgaagcaaaacaaaggaccaatttcttctaaaagcacaatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaaca |
34519699 |
T |
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| Q |
261 |
gggcccagaccttcatgggctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
360 |
Q |
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| T |
34519698 |
gggcccagaccttcatgagctaatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatcta |
34519599 |
T |
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| Q |
361 |
tcttct |
366 |
Q |
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|||||| |
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| T |
34519598 |
tcttct |
34519593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 30739961 - 30739863
Alignment:
| Q |
203 |
aagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgggctaatgatccctgtaaaataga |
301 |
Q |
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|||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
30739961 |
aagcgtaatcttgaaaatgaataaaagctgggaatgaattcattgccaccaagaaacaggtcccaaaccttcatgatataatgatccctgtaaaataga |
30739863 |
T |
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