View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12971_low_7 (Length: 335)
Name: NF12971_low_7
Description: NF12971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12971_low_7 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 11797793 - 11798093
Alignment:
| Q |
14 |
tttattgtgtttctaaatgcaatgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| || |
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| T |
11797793 |
tttattgtgtttctaaatgcaatgagaattgaaatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagg |
11797892 |
T |
|
| Q |
114 |
gaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||| |||||| |||||||||| |||| ||||| || |
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| T |
11797893 |
gaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctc |
11797992 |
T |
|
| Q |
214 |
ttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcactttttta |
313 |
Q |
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| T |
11797993 |
tttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattatggttagttcaattcttcactttttta |
11798092 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
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| |
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|
| T |
11798093 |
g |
11798093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 35 - 296
Target Start/End: Original strand, 11701770 - 11702031
Alignment:
| Q |
35 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
134 |
Q |
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||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
11701770 |
atgagaatttaaatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaac |
11701869 |
T |
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| Q |
135 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgat |
234 |
Q |
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||| ||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| ||| |||| ||||| || |||||||| |||||| |
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| T |
11701870 |
agggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgat |
11701969 |
T |
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| Q |
235 |
tcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttc |
296 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
11701970 |
tcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttc |
11702031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 11675880 - 11676132
Alignment:
| Q |
38 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
137 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
11675880 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11675979 |
T |
|
| Q |
138 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattct |
237 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| || || ||||| ||||||||| |
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| T |
11675980 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattct |
11676079 |
T |
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| Q |
238 |
tttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
290 |
Q |
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| T |
11676080 |
tttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11676132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 38 - 290
Target Start/End: Original strand, 11684159 - 11684411
Alignment:
| Q |
38 |
agaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacagg |
137 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
11684159 |
agaattgaaatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacagg |
11684258 |
T |
|
| Q |
138 |
accactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattct |
237 |
Q |
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|||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||| |||||||||| || || ||||| ||||||||| |
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| T |
11684259 |
accactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattct |
11684358 |
T |
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| Q |
238 |
tttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggt |
290 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |
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| T |
11684359 |
tttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggt |
11684411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 46 - 291
Target Start/End: Original strand, 11695984 - 11696229
Alignment:
| Q |
46 |
aatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactca |
145 |
Q |
| |
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|||||||| |||||||| | ||||||||||||| ||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
11695984 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11696083 |
T |
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| Q |
146 |
aacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttgg |
245 |
Q |
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|||||||||||| || ||||||| | ||||| ||||||||||||||||||||| |||| ||||| || || ||||| ||||||||||||||||| |
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| T |
11696084 |
aacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttgg |
11696183 |
T |
|
| Q |
246 |
acgctaccgcacaatcatacttgcttctctcatctatattttggtt |
291 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
11696184 |
acgctaccgcacaatcatgcttgcttctctcatctatatattggtt |
11696229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 66 - 310
Target Start/End: Original strand, 11778983 - 11779227
Alignment:
| Q |
66 |
tttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaacaggaccactcaaacaaagcactgtaacagct |
165 |
Q |
| |
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|||||||||||| |||||||||||||| |||| || |||| || |||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
11778983 |
tttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgct |
11779082 |
T |
|
| Q |
166 |
gctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgattcttttcttggacgctaccgcacaatcatac |
265 |
Q |
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||||||||||| ||| ||||||||||||||||| |||||||||| || || ||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
11779083 |
gctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcatac |
11779182 |
T |
|
| Q |
266 |
ttgcttctctcatctatattttggttagttcaattcttcactttt |
310 |
Q |
| |
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|||||||||| |||||| | |||||| |||| |||||||||||| |
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| T |
11779183 |
ttgcttctcttatctatgtattggttggttctgttcttcactttt |
11779227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 16415 - 16690
Alignment:
| Q |
35 |
atgagaattgaaatgaattatgaatgttttgtttaggtgtggaagtggcagagaggatatcattttatgggattcaggggaatttgatatcatatctaac |
134 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| || ||||||||||||||||| |
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| T |
16415 |
atgagaattgaaatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaac |
16514 |
T |
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| Q |
135 |
aggaccactcaaacaaagcactgtaacagctgctaagaatgtcaatatttgggctggaactgctgctctccttcccctgttaggtgcnnnnnnngctgat |
234 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| || |||||||| |||||| |
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| T |
16515 |
aggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgat |
16614 |
T |
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| Q |
235 |
tcttttcttggacgctaccgcacaatcatacttgcttctctcatctatattttggttagttcaattcttcactttt |
310 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||| |||| |||||||||||| |
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| T |
16615 |
tcttttcttggacgctatcacacaatcatacttgcttctcttatctatatattggttggttctgttcttcactttt |
16690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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