View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12972_high_5 (Length: 226)
Name: NF12972_high_5
Description: NF12972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12972_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31524886 - 31525093
Alignment:
| Q |
1 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataagcgatataatctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31524886 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactgcagaatcaaacagatagattaaactaatatcaatgtataagcgatataatctt |
31524985 |
T |
|
| Q |
101 |
aggtccagtggagctgcgaataaaacacataacaactgattagaactaactattattaatgtgactaaattgattagaacctaaactgtatggaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31524986 |
aggtccagtggagctgcgaataaaacacataacaactgattagaactaacaattattaatgtgactaaattgattagaacctaaactttatggaaatcaa |
31525085 |
T |
|
| Q |
201 |
tcaagatt |
208 |
Q |
| |
|
|||||||| |
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| T |
31525086 |
tcaagatt |
31525093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33366615 - 33366408
Alignment:
| Q |
1 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataagcgatataatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33366615 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactacagaatcaaacagatagattaaactaatatcaatgtataagcgatataatctt |
33366516 |
T |
|
| Q |
101 |
aggtccagtggagctgcgaataaaacacataacaactgattagaactaactattattaatgtgactaaattgattagaacctaaactgtatggaaatcaa |
200 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33366515 |
aggtccagtggagctgcaaataaaacacataacaactgattagaactaacaattattaatgtgactaaattgattagaacctaaactttatggaaatcaa |
33366416 |
T |
|
| Q |
201 |
tcaagatt |
208 |
Q |
| |
|
|||||||| |
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|
| T |
33366415 |
tcaagatt |
33366408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49194843 - 49195050
Alignment:
| Q |
1 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaatatcaatgtataagcgatataatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49194843 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacaactacagaatcaaacagatagattaaactaatatcaatgtataagcgatataatctt |
49194942 |
T |
|
| Q |
101 |
aggtccagtggagctgcgaataaaacacataacaactgattagaactaactattattaatgtgactaaattgattagaacctaaactgtatggaaatcaa |
200 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49194943 |
aggtccagtggagctgcaaataaaacacataacaactgattagaactaacaattattaatgtgactaaattgattagaacctaaactttatggaaatcaa |
49195042 |
T |
|
| Q |
201 |
tcaagatt |
208 |
Q |
| |
|
|||||||| |
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|
| T |
49195043 |
tcaagatt |
49195050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 41437022 - 41436949
Alignment:
| Q |
1 |
ttcttccccaatgtcaaagcacaaaatgattcatagagtaacacctgcagaatcaaacagataggttaaactaa |
74 |
Q |
| |
|
||||| ||||| |||||| |||||||||| |||| |||||| |||||||||||||||| || ||||||||| |
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| T |
41437022 |
ttcttgcccaaagtcaaatgacaaaatgatccatatggtaacatatgcagaatcaaacagagagattaaactaa |
41436949 |
T |
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