View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12972_low_1 (Length: 644)
Name: NF12972_low_1
Description: NF12972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12972_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 626
Target Start/End: Complemental strand, 8181609 - 8180996
Alignment:
| Q |
13 |
acatcatcatcggtaaaagaagcaatctcagcttcttcggcatattcttcattcatcaatgttgaaacagaatcaccaccattactattctcctcaaaaa |
112 |
Q |
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| T |
8181609 |
acatcatcatcggtaaaagaagcaatctcagcttcttcggcatattcttcattcatcaatgttgaaacagaatcaccaccattactattctcctcaaaaa |
8181510 |
T |
|
| Q |
113 |
cctcattcgaaaatctctccttcaacgaagatctaacacgaatcatttcaacaggctcgattttaacgaacaagagtggttgatcgttgtttctataact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8181509 |
cctcattcgaaaatctctccttcaacgaagatctaacacgaatcatttcaacaggctcgattttaacgaacaagagtggttgatcgttgtttctataact |
8181410 |
T |
|
| Q |
213 |
cctcttacagttcaaagatgtactaatgcttaatccttctttaattactccataatcagccaaatctacaacagagtttcccaataattgacccttaaca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8181409 |
cctcttacagttcaaagatgtactaatgcttaatccttctttaattactccataatcagccaaatctacaacagaatttcccaataattgacccttaaca |
8181310 |
T |
|
| Q |
313 |
atcttgttatctcttcttggttcgtataagttgaattccaagaaattcttttgaaacacattggaatcaccacctctaatggacacatccctcaataatg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
8181309 |
atcttgttatctcttcttggttcgtataagttgaattccaagaaattcttttgaaacacattggaatcaccacctctaacggatacatccctcaacaatg |
8181210 |
T |
|
| Q |
413 |
tcgctgaaattctaaacgattgattgaattcaattcttccttcacctataactgaaccaagtgaaggtgagactagtttagtcgaagctaatgtgttaga |
512 |
Q |
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| |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||| ||| || || |||||||| |||| |
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| T |
8181209 |
ttgctgaaattctaaatgattgattgaactcgattcttccttcacctatgaccgaaccaagtgaaggtgatactaattttgtagagcctaatgtgctaga |
8181110 |
T |
|
| Q |
513 |
accattcttcaattccattaaaacggaatgaagggatcttaaagattgtgatggaggccaaggcttaatctcttgaatatgaattaggtaatcaacttga |
612 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8181109 |
accattcttcaattccattaaaacggaatgaagagatcttaaagattgtgatggaggccaaggcttaatctcttgaatatgaattaggtaatcaacttga |
8181010 |
T |
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| Q |
613 |
actttgctagttct |
626 |
Q |
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|||||||||||||| |
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| T |
8181009 |
actttgctagttct |
8180996 |
T |
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