View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12972_low_2 (Length: 456)
Name: NF12972_low_2
Description: NF12972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12972_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 31530615 - 31531052
Alignment:
| Q |
1 |
aaattagcatgttgactgtctaatttaacttattttgtgagcccatatttccaataatgagtttattttaagtttatcgatcgaaattagtcaagttcaa |
100 |
Q |
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| T |
31530615 |
aaattagcatgttgactgtctaatttaatttattttgtgagcccgtatttccaataatgagtttatgttaagtttatcgatcgaaattagtcgagttcaa |
31530714 |
T |
|
| Q |
101 |
tctcttaatgaagtgatctttagatttttgaacaaactcattaataatattagctgattnnnnnnnncattactg-tgtcgtttttcctgaaaaccgaat |
199 |
Q |
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| T |
31530715 |
tctcttaatgaagcgatctttagatttttgaacaaactctttaataatatttgctgattaaaaaaaaaattattaatgtcgtttttcctaaaaatcgaat |
31530814 |
T |
|
| Q |
200 |
aattagacaaatataattactctctaaaaataaatattgaattattaactatgcgtaccgaaggtggaaggactttttaataagtctgaggtcatttcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31530815 |
gattagacaaatataattactctctaaaaataaatattgaattattaacgatgcttaccgaaggtggatggactttttaataagtctgaggtcatttcaa |
31530914 |
T |
|
| Q |
300 |
aagtgtttgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaacacaatagcaaaatcattcaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31530915 |
aagtgtttgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaacacaatagcaaaatcattcaa |
31531014 |
T |
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| Q |
400 |
tgccttcacacaattccctccattaccagaggttactg |
437 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |
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| T |
31531015 |
tggcttcacacaattccctccattaccagaggttactg |
31531052 |
T |
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