View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12972_low_3 (Length: 374)
Name: NF12972_low_3
Description: NF12972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12972_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 135 - 350
Target Start/End: Original strand, 45072854 - 45073081
Alignment:
| Q |
135 |
ttctatactattgtactatcatattcatactacgtaccataaagaatatttaaattatcctcattaaattttgccttttctttttcgacata-------- |
226 |
Q |
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| T |
45072854 |
ttctttactattgtactatcatattcatactacgtaccataaagaatatttaaattatcctcattaaattttgccttttctttttcgacgtacacatgtt |
45072953 |
T |
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| Q |
227 |
----tatgcatattttgttcaaaattcaaagtacgcaccgcactttattttttatattcaatctttctttttctatgaaatattcggtctaaacttacaa |
322 |
Q |
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| T |
45072954 |
actatatgcatatttttttcaaaattcaaagtatgcaccgcactttattttttatattcaatctttctttttctatgaaatattcggtctaaacttacaa |
45073053 |
T |
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| Q |
323 |
gtacaaaaacataaattaaccaataact |
350 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
45073054 |
gtataaaaacataaattaaccaataact |
45073081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 45072779 - 45072854
Alignment:
| Q |
16 |
cataacatataaatatacttagcaacaccactatacttctattaa-ttacgaaagacgtctatggacacatacctt |
90 |
Q |
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| T |
45072779 |
cataacatataaatatacttagcaacaccactatacttctattaatttacgaaagacgtctatggacacatacctt |
45072854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 29364223 - 29364402
Alignment:
| Q |
20 |
acatataaatatacttagcaacaccactatacttctattaattacgaaagacgtctatggacacataccttgttatgatgcgacattttatacattaaat |
119 |
Q |
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| T |
29364223 |
acatataaatatgcttagctacaccaccatgcttctattaattaagaaagacgtctatggtctcatagcttggcatgatgcaacattttttacattaaat |
29364322 |
T |
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| Q |
120 |
atttatgactcactattctatactattgtactatcatattcatactacgtaccataaagaatatttaaattatcctcatta |
200 |
Q |
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|||| ||||||| | ||||||| || ||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
29364323 |
atttgtgactcagtgttctataatacagtaatatcatattcatactacgtaccatatagaat-tttaaattatcatcatta |
29364402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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