View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12973_high_10 (Length: 287)
Name: NF12973_high_10
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 52238864 - 52239133
Alignment:
| Q |
1 |
ttattcatgatggaagccattttagaacaattttgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52238864 |
ttattcatgatggaagccattttagaacaattttgtacttggatggaaccaaggatctaaaaaccttaactgaatcaatggttttacggcataccaacat |
52238963 |
T |
|
| Q |
101 |
gctttattgttgttaacaggaaataaaatatggaattttcaatcaaatgggttaagaatagtaagtactagacgannnnnnnnnnnnnnnnntattctta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52238964 |
gctttattgttgttaacaggaaataaaatatggaattttcaatcaaatgggttaagaatagtaagtactagacgaacacacagacacacacatattctta |
52239063 |
T |
|
| Q |
201 |
cgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttctt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52239064 |
cgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttctt |
52239133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University