View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_high_11 (Length: 253)
Name: NF12973_high_11
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 37154470 - 37154698
Alignment:
| Q |
20 |
cattggactttggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgta |
119 |
Q |
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| T |
37154470 |
cattggactttggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgta |
37154569 |
T |
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| Q |
120 |
tgattatacgtttcatatgttctaactcaatctcactcatcaattgttggcctttgacaacagaacaaagaggtttggactggttttcaagattgcggcg |
219 |
Q |
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| T |
37154570 |
tgattatatgtttcatatgttctaactcaatctcactcatcaattgttggcctttgaaaacagaacaaagaggtttggactggttttcaagattgcggcg |
37154669 |
T |
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| Q |
220 |
ttgatatgtttgccggttcctttgctact |
248 |
Q |
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| T |
37154670 |
ttgatatgtttgccggttcctttgttact |
37154698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 37199825 - 37200053
Alignment:
| Q |
20 |
cattggactttggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199825 |
cattggactttggactgcacatgtattttggacatactattgtgtagcaaggttgtactttctttccaaattctttggacttgcaattgcaaactatgta |
37199924 |
T |
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| Q |
120 |
tgattatacgtttcatatgttctaactcaatctcactcatcaattgttggcctttgacaacagaacaaagaggtttggactggttttcaagattgcggcg |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199925 |
tgattatatgtttcatatgttctaactcaatctcactcatcaattgttggcctttgaaaacagaacaaagaggtttggactggttttcaagattgcggcg |
37200024 |
T |
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| Q |
220 |
ttgatatgtttgccggttcctttgctact |
248 |
Q |
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| T |
37200025 |
ttgatatgtttgccggttcctttgttact |
37200053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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