View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_high_4 (Length: 516)
Name: NF12973_high_4
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 32779271 - 32778771
Alignment:
| Q |
1 |
caaactcctctgttagacctttgcctcatcaactttcatccacccctcctctttctaccgatgcaagagttggttctcaagactcaaaatttgtaagcac |
100 |
Q |
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| T |
32779271 |
caaactcctctgttagacctttgcctcatcaactttcatccacccctcctctttctaccgatgcaagagttggttctcaagactcaaaatttgtaagcac |
32779172 |
T |
|
| Q |
101 |
tcttcattcaaccgttcacacttcttgccatgtgattgtgatttgtgatatcagttttttaatgttcgccgattaatcatatatggatagttgattttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32779171 |
tcttcattcaaccgttcacacttcttgccatgtgattgtgatttgtgatatcagttttttaatgttcgccgattaatcatatatggatagttgattttgt |
32779072 |
T |
|
| Q |
201 |
atattttcaggaaccatctaaaggtttgccggagtttctagactatgtttcatgtatggctcagttagctgttttcggaattcttggggtaatacacgaa |
300 |
Q |
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| T |
32779071 |
atattttcaggaaccatctaaaggtttgccggagtttctagactatgtttcatgtacggctcagttagctgttttcggaattcttggggtaatacacaaa |
32778972 |
T |
|
| Q |
301 |
ccctttaagttttcatttagcttgaattgttagctatactaatactgatattgataatggtacttgtaagctaatacacaaattttcataataactatgc |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32778971 |
ccttttaagttttcatttagcttgaattgttagctatactaatactgatattgataatggtacttgtaagctaatacacaaattttcataataactatgc |
32778872 |
T |
|
| Q |
401 |
aggtcatcacaagatatttactgcaaaaattatttggccctggggttgccaacgtgactagcaaccatactattctttaccttgaccttccttctaatat |
500 |
Q |
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| T |
32778871 |
aggtcatcacaagatatttactgcaaaaattatttggccctggggttgccaacgtgactagcaaccatactattctttaccttgaccttccttctaatat |
32778772 |
T |
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| Q |
501 |
g |
501 |
Q |
| |
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| |
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| T |
32778771 |
g |
32778771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 497
Target Start/End: Original strand, 1034470 - 1034513
Alignment:
| Q |
454 |
gtgactagcaaccatactattctttaccttgaccttccttctaa |
497 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
1034470 |
gtgactagtgaccaaactattctttaccttgaccttccttctaa |
1034513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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