View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_high_5 (Length: 512)
Name: NF12973_high_5
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 23992665 - 23992192
Alignment:
| Q |
19 |
ggatacggtgcaatagatctccctgatcgacatcgtcgtttcttagttggaggaatatccattatagtatagtgtgttgaagttgaataaaccctaactc |
118 |
Q |
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| T |
23992665 |
ggatacggtgcaatagatctccctgatcgacatcgtcgtttcttagttggaggaatatccattatagtatagtgtgttgaagttgaataaaccctaactc |
23992566 |
T |
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| Q |
119 |
atgcaactctatcaatgtgaactcaaatctgaaacagaaaaaccctaacgcatgcaactctatcgatgctatatataactattgttaatgggccaaggtt |
218 |
Q |
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| T |
23992565 |
atgcaactctatcaatgtgaactcaaatctgaaacagaaaaaccctaacgcatgcaactctatcgatgctatatataactattgttaatgggccaaggtt |
23992466 |
T |
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| Q |
219 |
tgtggtttgcgggcccaggtgagagagaacnnnnnnnctcttggatttcaatccttgaggagttttgcgtccttcccttttgtacaatccagaagcataa |
318 |
Q |
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| T |
23992465 |
tgtggtttgcgggcccaggtgagagagaactttttttctcttggatttcaatccttgaggagttttgcgtgcttcccttttgtacaatccagaagcataa |
23992366 |
T |
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| Q |
319 |
caaagagtgttggagcagaggcaagccgcagtgactgttaccgcagagccgagtgtgctacattgacttgaaagtgaagaattcgatgggatggtggtgg |
418 |
Q |
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| T |
23992365 |
caaagagtgatggagcagaggcaagccgcggtgactgttaccgcagagccgagtgtgctacattgacttgaaagtgaagaattcgatgggatggtggtgg |
23992266 |
T |
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| Q |
419 |
tgtaaaaattagaggatgaagatgggttaacttaggggaggtctcgtggaagaaagaaaatgaataagtgacaa |
492 |
Q |
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| T |
23992265 |
tgtaagaattcgaggatgaagatgggttaacttaggagaggtctcgcggaagaaagaagatgaatatgtgacaa |
23992192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 24000919 - 24000868
Alignment:
| Q |
192 |
tataactattgttaatgggccaaggtttgtggtttgcgggcccaggtgagag |
243 |
Q |
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|||||||||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
24000919 |
tataactattgtaaatgggccaaggttgaaggattgcgggcccaggtgagag |
24000868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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