View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_high_7 (Length: 386)
Name: NF12973_high_7
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 28962884 - 28962530
Alignment:
| Q |
18 |
aatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaattttctttta |
117 |
Q |
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| T |
28962884 |
aatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatcctagcagagaatcaattttctttta |
28962785 |
T |
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| Q |
118 |
ctgctaaattttgaactgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattatta |
217 |
Q |
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| T |
28962784 |
ctgctaaattttgaattgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattatta |
28962685 |
T |
|
| Q |
218 |
aacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28962684 |
aacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaatgtttcagactttt |
28962585 |
T |
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| Q |
318 |
tcaactctctttcagcccaagcaacatgatcgtcatcaccaccacaaaaaccgcc |
372 |
Q |
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| T |
28962584 |
tcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaaaaccgcc |
28962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 164 - 369
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
164 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
263 |
Q |
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||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
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| Q |
264 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
363 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
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| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
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| Q |
364 |
aaaacc |
369 |
Q |
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|||||| |
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| T |
29002267 |
aaaacc |
29002262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 29002619 - 29002550
Alignment:
| Q |
38 |
atacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaatttt |
111 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||| || || |||||||||| ||||||||||| |
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| T |
29002619 |
atacaaacttatgaatatgttcaaatcatgtacctccaagtggtt----aaaatccttgcagtgaatcaatttt |
29002550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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