View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_high_9 (Length: 321)
Name: NF12973_high_9
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 40540079 - 40539788
Alignment:
| Q |
19 |
aaagtagcatgtaaataattttacaaatcaatccctttctcaatctatataactcgccctttcttatttgctctcatttcagagaaataaaattaatctt |
118 |
Q |
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| T |
40540079 |
aaagtagcatgtaaataattttacaaatcaatccctttctcaatctatataactcgccctttcttatttgctctcatttcagagaaataaaattaatctt |
40539980 |
T |
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| Q |
119 |
ctctatattctcttattaatcctagcagctaccttacaccccaacttgaatcaaatggatcctaaccagatcaagaagattcaagctatgaacaagtaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40539979 |
ctctatattctcttattaatcctagcagctaccttacacccctacttgaatcaaatggatactaaccagatcaagaagattcaagctatgaacaagtaca |
40539880 |
T |
|
| Q |
219 |
agaagcaccaattcctagaaaatttacatttttattccttaacagcattaatatgtagtttattttgctgtgtcacactttgctcaccctat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40539879 |
agaagcaccaattcctagaaaatttacatttttattccttaacagcattaatatgtagtttattttgctgtgtcacactttgcttaccctat |
40539788 |
T |
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