View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_1 (Length: 705)
Name: NF12973_low_1
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 703
Target Start/End: Original strand, 1239068 - 1239756
Alignment:
| Q |
18 |
ggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1239068 |
ggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcgc |
1239167 |
T |
|
| Q |
118 |
ctggatttccatcaactccaaatttaaatgcaatggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatatt |
217 |
Q |
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|||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
1239168 |
ctggatttccatcaactccaaatttagattgaacggccgctgctacaataatctgtgtcaaaacaaattcgtattagcaaagaaagatgagcaacatatt |
1239267 |
T |
|
| Q |
218 |
attgtggtatgtattattttgcctaaccactagctccagtggaaatgattagtgtactattatgtgttatgaatttcaaagttgatatgatatttgcctt |
317 |
Q |
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||||||||| || ||||||| |||||||||| ||| |||| ||||||||| ||||| | ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
1239268 |
attgtggtaggtgttattttttctaaccactaactctagtgcaaatgattattgtac-actatgtgttatgaatttcaaagttcatatgatattttcctt |
1239366 |
T |
|
| Q |
318 |
ttagaagatcaaagtagacaaccaataatt-ttctttgaaagtatattgaggttgatagatgaatcatttatgcatatatttataagtg----------- |
405 |
Q |
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| T |
1239367 |
ttaaaagttaaaagttgacaaccaataattattttttaaaagtatattgactttgatagatgaatcatttatgcatatatttataagtgtgtcatccaaa |
1239466 |
T |
|
| Q |
406 |
-----ttcagttgataattgcataaacatctgatgtgttggggcgcatattctaatccgcgattctctacttattatacacacacttaaggcgtgtgact |
500 |
Q |
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| T |
1239467 |
tacgattcagttcataattgcataaacatatgatgtgttggggcacagattctaatccgcgattctccacttat--------------aggtgtgtgatt |
1239552 |
T |
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| Q |
501 |
ctcatcactcttggctatttgacaaagagtgtgtcaaaacta--gtgtgctttccaatttgataaacaaaaaaccaatatgtttctcaagagtgtaaata |
598 |
Q |
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||| ||||||| |||||||||||||| ||||| ||||| ||| |||||||| |||| |||||||||||||| | ||||||||||||||||| ||||| |
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| T |
1239553 |
ctcgtcactctcggctatttgacaaaaagtgt-tcaaagctagtgtgtgcttctcaatatgataaacaaaaaagtagtatgtttctcaagagtggaaata |
1239651 |
T |
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| Q |
599 |
ccaaaatagtcaaatctaatttaatgtcgattaaatatttcaaaaattaaataaagggagttatttaatcaatgtacctggcaaataaacatctgtgctc |
698 |
Q |
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| T |
1239652 |
tcacaatagtcaaatctaatttaatgttgattaaatatttcaaaaattaattaaagggagttatttaatcaatgtacctggcagataaacatttgagctc |
1239751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 42517687 - 42517842
Alignment:
| Q |
18 |
ggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcac |
117 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42517687 |
ggcaccaaccatccaagaggaccccaagaccatgcaaaacccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggcagctcac |
42517786 |
T |
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| Q |
118 |
ctggatttccatcaactccaaatttaaatgcaatggccactgctacaataatctgt |
173 |
Q |
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| T |
42517787 |
caggattcccatcaactccaaatttagatgcaatggccacggctacaatgatctgt |
42517842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 703
Target Start/End: Original strand, 42518029 - 42518077
Alignment:
| Q |
655 |
ggagttatttaatcaatgtacctggcaaataaacatctgtgctcctcct |
703 |
Q |
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| T |
42518029 |
ggagttatttaatcaatgtacctgacaaataaacatttgagctcctcct |
42518077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 42552253 - 42552197
Alignment:
| Q |
17 |
aggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacaca |
73 |
Q |
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| T |
42552253 |
aggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacaca |
42552197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 41971574 - 41971858
Alignment:
| Q |
18 |
ggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41971574 |
ggcaccaaccatccaagaggaccccaagaccatgtgaatcccatcacatacacgcatatgcctatcacaacaagcaatgcataccactttggaagctcac |
41971673 |
T |
|
| Q |
118 |
ctggatttccatcaactccaaatttaaatgcaat-ggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatat |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41971674 |
ctggatttccatcaactccaaatttaaatgcaatgggccactgctacaataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatat |
41971773 |
T |
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| Q |
217 |
tattgtggtatgtattattttgcctaaccactagctccagtggaaatgattagtgtactattatgtgttatgaatttcaaagttga |
302 |
Q |
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| T |
41971774 |
tattgtggtatgtattattttgcctaaccactagctccagtggaaatgattagt-tactattatgtgttatgaatttcaaagttga |
41971858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 18233961 - 18234052
Alignment:
| Q |
18 |
ggcaccaaccatccaagaggaccccaagaccatgcgaatcccatcacatacacacatatgcctatcacaacaagcaatgcataccactttgg |
109 |
Q |
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||||||||||| || |||||||||||||||||||| ||||| || |||||||| |||| || ||||||| | ||||||||||||||| |
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| T |
18233961 |
ggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacacacaaatgcacataacaacaacaattgcataccactttgg |
18234052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 41971856 - 41971885
Alignment:
| Q |
205 |
tgagcaacatattattgtggtatgtattat |
234 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41971856 |
tgagcaacatattattgtggtatgtattat |
41971885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 63 - 222
Target Start/End: Complemental strand, 21403577 - 21403419
Alignment:
| Q |
63 |
acatacacacatatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatggccactgcta |
162 |
Q |
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| T |
21403577 |
acatacacatatatgcctaccacaacaatca-tacataccactttgacagctcacctggatttccatcaacaccaaatttagatgcaatggctgctgcta |
21403479 |
T |
|
| Q |
163 |
caataatctgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgt |
222 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||||||| | || |||||||||| |
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| T |
21403478 |
caataatctgtgccaaaacaaatttgtattaggaaagaaatatgtgtaaaatattattgt |
21403419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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