View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_16 (Length: 241)
Name: NF12973_low_16
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6651166 - 6651404
Alignment:
| Q |
1 |
ttaccttttaaaattttgnnnnnnnctttattgggttaattcatgatgacacttgatgtaggactgttcacgtgggtttccttatacttggtaatctgtg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6651166 |
ttaccttttaaaattttgtttttttctttattgggttaattcatgatgacacttgatgtaggactgttcacgtgggtttccttatacttggtaatctgtg |
6651265 |
T |
|
| Q |
101 |
attatgaatgatttctatcaatgctttttgtatgtcattgtaattattagaagaaagatagtactagcttttttcattaacaagggcaatctagtttggt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6651266 |
attatgaatgatttctatcaatgctttttgtatgtcattgtaattattagaagaaagatagtactagcttttttcattaacaagggcaatctagtttggt |
6651365 |
T |
|
| Q |
201 |
ggcagggagaaagttaataacttattgtggggtagtata |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6651366 |
ggcagggagaaagttaataacttattgtggggtagtata |
6651404 |
T |
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