View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_18 (Length: 240)
Name: NF12973_low_18
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33972115 - 33972333
Alignment:
| Q |
1 |
tgaaatatttaactttctcgatttcttatttcatcgtgtcttctgtcggaagtcaagagttgttcaactggctaatggcgagaggtcttatcacatactt |
100 |
Q |
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| T |
33972115 |
tgaaatatttaactttctcgatttcttatatcatcgtgtcttctgtcggcagtcaagagttgttcaactggctaatggcgagaggtcttatcacatattt |
33972214 |
T |
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| Q |
101 |
tatcaactttgtgctggatcttcacctcatctcttaaaggtgtattttctatacaacctatcaattagttgggatacatgtatacttctgtatcatcttt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||| |
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| T |
33972215 |
tatcaactttgtgctggatcttcacctca--tcttaaaggtgtattttctatacaacttatcaattagtttggatacttgtatacttctgtaccatcttt |
33972312 |
T |
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| Q |
201 |
gatatctcaatgaccatcttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33972313 |
gatatctcaatgaccatcttt |
33972333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1332445 - 1332646
Alignment:
| Q |
1 |
tgaaatatttaactttctcgatttcttatttcatcgtgtcttctgtcggaagtcaagagttgttcaactggctaatggcgagaggtcttatcacatactt |
100 |
Q |
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| T |
1332445 |
tgaaatatttaactttctggatttcttatatcatcgtgtcttctgtcggaagtcaagagttgttcaactggctaatggcgagaggtcttatcacatactt |
1332544 |
T |
|
| Q |
101 |
tatcaactttgtgctggatcttcacctcatctcttaaaggtgtattttctatacaacctatcaattagttgggatac--atgtatacttctgtatcatct |
198 |
Q |
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| T |
1332545 |
tatcaactttgtgctggatcttcacctca--tcttaaaggtgtattttctatacaacctatcaattagttgggatacatatgtatacttctgtatcatct |
1332642 |
T |
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| Q |
199 |
ttga |
202 |
Q |
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|||| |
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| T |
1332643 |
ttga |
1332646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 22792266 - 22792336
Alignment:
| Q |
51 |
agtcaagagttgttcaactggctaatggcgagaggtcttatcacatactttatcaactttgtgctggatct |
121 |
Q |
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||||||||||||||||| |||| | ||| |||||||| |||||| || ||||||||||||||||||||||| |
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| T |
22792266 |
agtcaagagttgttcaattggccagtggtgagaggtcgtatcacgtattttatcaactttgtgctggatct |
22792336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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