View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_19 (Length: 237)
Name: NF12973_low_19
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 45956525 - 45956354
Alignment:
| Q |
17 |
aatatagctactaatgatggagaacacaatagtaagataacaagagtagttgcagtcacaaccattgccatattcaacatgattgccaataaatagttta |
116 |
Q |
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| T |
45956525 |
aatatagctactgatgattgagaacacaatagtaagataacaagagtggttgcagtcacaaccattgccatattcaacatgactgccaataacaagttta |
45956426 |
T |
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| Q |
117 |
atgatatttgatgtaactttgtaaggtgtgagtcctaactatgaactaagtaatgtatttataggcatattg |
188 |
Q |
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| T |
45956425 |
atgatctttgatgtaactttgtaaggtgtgagtcctaactatgaactaagcaatgtatttataggcatattg |
45956354 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 45963125 - 45963054
Alignment:
| Q |
136 |
tgtaaggtgtgagtcctaactatgaactaagtaatgtatttataggc-atattggcactatgccatacatgca |
207 |
Q |
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| T |
45963125 |
tgtaaggtgtgaattctaacta-gaactaagtaatgtatttataggcaatattggtatcatgccatgcatgca |
45963054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 45972157 - 45972110
Alignment:
| Q |
136 |
tgtaaggtgtgagtcctaactatgaactaagtaatgtatttataggcat |
184 |
Q |
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| T |
45972157 |
tgtaaggtgcgaattctaacta-gaactaagtaatgtatttataggcat |
45972110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 33131948 - 33131881
Alignment:
| Q |
31 |
tgatggagaacacaatagtaagataacaagagtagttgcagtcacaaccattgccatattcaacatgattg |
101 |
Q |
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| T |
33131948 |
tgattgagaacataatatgaagataacaagagctgt---agtgacaaccattgccatattcaacatgattg |
33131881 |
T |
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