View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_2 (Length: 656)
Name: NF12973_low_2
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 13022736 - 13023361
Alignment:
| Q |
1 |
tggcagccatagctcataggtagcttgcaaaacaagtaactctttaagaaccttggaacacaagtcactgtctgatgctgacacggccatgccacattta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13022736 |
tggcagccatagctcataggtagcttgcaaaacaagtaactctttaagaaccttggaacacaagtcactgtctgatgctgacacgaccatgccacattta |
13022835 |
T |
|
| Q |
101 |
gcttcattcaattacttctatttcttaaattattgcatgtgcttacacgttagtgtcacgtacggtgtctgtgtccgctcttgatagattaattatctcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13022836 |
gcttcattcaattacttctatttcttaaattattgcatgtgcttacacgttagtgtcacgtacggtgtctgtgtccgttcttgatagattaattatctcc |
13022935 |
T |
|
| Q |
201 |
ggtttgcaacttatattttttaaaaacaaatgtagtcattgtccaatcttagttttcactagacaactagggaatgaatgtttgattttgatcattttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13022936 |
ggtttgcaacttatattttttaaaaacaaatgtagtcattgtccaatcttagttttcactagacaactagggaatgaatgtttgattttgatcattttga |
13023035 |
T |
|
| Q |
301 |
gaaatatgcttgctcctaaactttctttctcatgtcttgaaatcggaacctccacctttggtccagtgttgtctacatgtctagtaaaacttctattctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13023036 |
gaaatatgcttgctcctaaactttctttctcatgtcttgaaatcggaacctccacctttggtccagtgttgtctacatgtctggtaaaacttctattctt |
13023135 |
T |
|
| Q |
401 |
tttaaagaaaatacctgaatttcctggtatcagaaataaggttcttggtgcctgtaacccacttttgaacccttccctttcgacatgtattatataatag |
500 |
Q |
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| T |
13023136 |
tttaaagaaaatacctgaatttcctggtatcagaaataaggttcttggtgcctgtaacccacttttgaacccttccctttcgacatgtattatataatag |
13023235 |
T |
|
| Q |
501 |
tacttttatttcaacaatacctaagctaagcttgaatgaaatctatgttacttctgatatgaggagcattactttgctgaagtgattttctaaactgcag |
600 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13023236 |
tacttttatttcaacaatacctaagctaaacttgaatgaaatctatgttacttctgatatgaggagcattactttgctgaagtgattttctaaactgcag |
13023335 |
T |
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| Q |
601 |
gtatgtaaacatgacacaggttctgc |
626 |
Q |
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| T |
13023336 |
gtatgtaaacatgacacaggatctgc |
13023361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 42654366 - 42654395
Alignment:
| Q |
105 |
cattcaattacttctatttcttaaattatt |
134 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42654366 |
cattcaattacttctatttcttaaattatt |
42654395 |
T |
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