View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12973_low_3 (Length: 642)

Name: NF12973_low_3
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12973_low_3
NF12973_low_3
[»] chr5 (9 HSPs)
chr5 (19-355)||(9617183-9617532)
chr5 (473-632)||(9617526-9617684)
chr5 (165-279)||(17391577-17391691)
chr5 (171-279)||(17382807-17382914)
chr5 (160-276)||(1348782-1348898)
chr5 (182-277)||(19970551-19970646)
chr5 (182-268)||(20110862-20110948)
chr5 (189-279)||(17376447-17376537)
chr5 (160-234)||(20049074-20049148)
[»] chr3 (1 HSPs)
chr3 (196-275)||(32243151-32243230)
[»] chr6 (3 HSPs)
chr6 (185-275)||(16229247-16229337)
chr6 (197-275)||(16259556-16259634)
chr6 (194-279)||(31114506-31114591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (195-243)||(21471-21519)
scaffold0009 (193-256)||(39743-39806)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 9617183 - 9617532
Alignment:
Q  19 aattttcatctccacttcaaccaaaccttcttattcgatttcctcttcaattttatttcttctccacaacaacttcctctagtcaat-agatatggaaaa 117  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||||||| ||||| | | ||||||||    
T  9617183 aattttcctctacacttcaaccaaaccttcttattcgatttcctcttcaattttctt-cttcacaagatcaacttcctctaatcaattatagatggaaaa 9617281  T
Q  118 cattcttcaccaacca---------------aaaaggccacggctgtcattgtcgacgacgatcaatgacttacccaatgatatagtaactcacattctc 202  Q
    ||||||||||||||||               |||||||||||||||||||||||||| || || ||  | |||||  || ||||||||||||||||||||    
T  9617282 cattcttcaccaaccactgcctcctgccacaaaaaggccacggctgtcattgtcgaccacaattaacaatttacctgataatatagtaactcacattctc 9617381  T
Q  203 tcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctcagttctcgacttccaagatgccg 302  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||   |  ||    
T  9617382 tcttttctcccactcaaatacgctttcagaactatcgttctctcgaaaaggtgggtcccattatcccactcactctaagttctcgacttccacagtaacg 9617481  T
Q  303 atgtggagaacgcagacgacttctaccgattaatcaacgcagtcatgatctcc 355  Q
    |||| |||||  || | |||||||| |||||||||||||||||||||||||||    
T  9617482 atgtcgagaa--cacatgacttctatcgattaatcaacgcagtcatgatctcc 9617532  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 473 - 632
Target Start/End: Original strand, 9617526 - 9617684
Alignment:
Q  473 gatctccgtctaacgttagtattaggcttcccccctttgccgcctaccattttctcctcctgcgaaacacttgtgattctccatttgtggagtttacgtg 572  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9617526 gatctccgtctagcgttagtattaggcttctcccctttgccgcctaccattttctcctcctgcgaaacacttgtgattctccattt-tggagtttacgtg 9617624  T
Q  573 tagccactatgactcattgctctgttcatcttcctttacttaagaccctggatctgatga 632  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  9617625 tagccactatgactcattgttctgttcatcttcctttacttaagaccctggatatgatga 9617684  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 17391577 - 17391691
Alignment:
Q  165 tcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccatt 264  Q
    |||||||||| ||  |||| ||| ||||||||||||||||||| || |||  |||| ||||||| ||||| |||||||| |||||||| |||||| ||||    
T  17391577 tcaatgacttccctgatgagatactaactcacattctctctttgcttccatgcaaagacgcttttagaaccaccgttctttcgaaaagatgggtctcatt 17391676  T
Q  265 atgccactcactctc 279  Q
    |||||||||||||||    
T  17391677 atgccactcactctc 17391691  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 17382807 - 17382914
Alignment:
Q  171 acttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgcca 270  Q
    |||| ||| |||||||| |||||||||||||||||||||| |||  |||| ||||||| ||||| |  ||||| |||||||| |||||| ||||||||||    
T  17382807 acttccccgatgatatactaactcacattctctcttttcttccatgcaaacacgcttttagaacca-tgttctttcgaaaagatgggtctcattatgcca 17382905  T
Q  271 ctcactctc 279  Q
    |||||||||    
T  17382906 ctcactctc 17382914  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 160 - 276
Target Start/End: Complemental strand, 1348898 - 1348782
Alignment:
Q  160 gacgatcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtc 259  Q
    |||| |||| ||||||||  | || ||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||| |||| || || || ||| ||    
T  1348898 gacggtcaacgacttaccagacgagatactaactcacattatctcttttctcacattcaaagacgctttcagaactaccattctttctaagagatggttc 1348799  T
Q  260 ccattatgccactcact 276  Q
    ||||||| |||| ||||    
T  1348798 ccattattccacacact 1348782  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 19970646 - 19970551
Alignment:
Q  182 gatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactc 277  Q
    |||||| |||||||||||||||||||||| ||| ||| | ||||||||||||| ||||| || || || | ||||||| |||| ||| ||||||||    
T  19970646 gatatactaactcacattctctcttttcttccaatcagagacgctttcagaaccaccgtgctttccaagacgtgggtctcattgtgctactcactc 19970551  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 20110862 - 20110948
Alignment:
Q  182 gatatagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgc 268  Q
    |||||| ||||||||||  |||||||||| ||| ||||| ||||||||| ||| ||||||||||| || |  |||||| ||||||||    
T  20110862 gatatactaactcacatcgtctcttttcttccattcaaagacgctttcaaaaccaccgttctctcaaagaaatgggtctcattatgc 20110948  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 17376447 - 17376537
Alignment:
Q  189 taactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctc 279  Q
    ||||||| ||||||||||| || |||   ||| ||||||| |||  ||| ||||| |||||||| ||| || |||||||||||||||||||    
T  17376447 taactcatattctctctttacttccatgtaaagacgcttttagatttacagttctttcgaaaagatggatctcattatgccactcactctc 17376537  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 20049074 - 20049148
Alignment:
Q  160 gacgatcaatgacttacccaatgatatagtaactcacattctctcttttctcccactcaaatacgctttcagaac 234  Q
    |||||| |||||||| | | | || ||| ||| |||||||||||||||||||||  ||||||||| |||||||||    
T  20049074 gacgattaatgacttcctcgacgaaatactaattcacattctctcttttctccctatcaaatacgttttcagaac 20049148  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 32243230 - 32243151
Alignment:
Q  196 cattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 275  Q
    |||||||| |||||| ||| ||||| ||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||    
T  32243230 cattctcttttttcttccagtcaaagacgctttcagaactaccattctttcgaagaggtgggtcccattacgccactcac 32243151  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 16229337 - 16229247
Alignment:
Q  185 atagtaactcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 275  Q
    ||||||| ||| |||||||||||||| ||| ||||| | ||||||||||||||| |||| ||||| ||||||||| ||||||| |||||||    
T  16229337 atagtaagtcaaattctctcttttcttccaatcaaagaggctttcagaactaccattctttcgaagaggtgggtctcattatgtcactcac 16229247  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 16259634 - 16259556
Alignment:
Q  197 attctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcac 275  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| |||| ||||| ||||||||| ||||||| |||||||    
T  16259634 attctctcttttcttccaatcaaagacgctttcagaactaccattctttcgaagaggtgggtctcattatgtcactcac 16259556  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 31114506 - 31114591
Alignment:
Q  194 cacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgggtcccattatgccactcactctc 279  Q
    |||||||| |||||||||||| ||||||| ||||| ||||| |  || || || || || ||||||||||||||||||||||||||    
T  31114506 cacattctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcactctc 31114591  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 21471 - 21519
Alignment:
Q  195 acattctctcttttctcccactcaaatacgctttcagaactaccgttct 243  Q
    |||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  21471 acattctctcttttcttccgatcaaatatgctttcagaactaccgttct 21519  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 39743 - 39806
Alignment:
Q  193 tcacattctctcttttctcccactcaaatacgctttcagaactaccgttctctcgaaaaggtgg 256  Q
    |||||| ||||||||||| ||  ||||||||||||||||||||||| |||| || || ||||||    
T  39743 tcacatactctcttttcttccgatcaaatacgctttcagaactaccattctttccaagaggtgg 39806  T

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