View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_5 (Length: 548)
Name: NF12973_low_5
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 169 - 533
Target Start/End: Complemental strand, 5952671 - 5952310
Alignment:
| Q |
169 |
gttgggagttttgggttaagaatcaccgacacaaatatgaacggtagacacgacattggtactgacacgttagattattgatgataattttagtaaatga |
268 |
Q |
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| T |
5952671 |
gttgggagtttttggttaaaaatcaccgacacaaatatgaacagtagacacgacattggtactgacacgttagattattgatgataattttagtaaatga |
5952572 |
T |
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| Q |
269 |
atgatttgaatgtacacatgtgtgttggtgtcgtgtcagtgtctggcacctacacatgtcaaacaatggacacacctttaaatcagaagaagtgtcggtg |
368 |
Q |
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| T |
5952571 |
atgatttgaatgtacacatgtgtgtcggtgtcgtgtcagtgtctggcacctacacatgtcaaacaatggacacacctttaaatca---gaagtgtcggtg |
5952475 |
T |
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| Q |
369 |
ctacatagattttgaatcataatgggatacaatttttaacatttttgtgaggcgctcgtgagccatgaagcaccgaggcaaacaccgaatatgacactga |
468 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5952474 |
ctacatagattttgagtcagaatgagatacaatttttaacatttttgtgaggcgctcgtgagctatgaagcaccgaggcaaacaccgaatatgacactga |
5952375 |
T |
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| Q |
469 |
catgttgacaggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattgat |
533 |
Q |
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| T |
5952374 |
catgtggacaggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattgat |
5952310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 5952788 - 5952669
Alignment:
| Q |
22 |
gacccaactggtcgctatgccaaggtaagttcaaatcataatcttgtgnnnnnnncttgatatgttgagatgattgtaatctatttcatttgaatctggg |
121 |
Q |
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| T |
5952788 |
gacccaactggtcgctatgccaaggtaagttcaaatcataatcttgtgtttttttcttgatatgttgagatgattgtaatctatttcatttgaatttggg |
5952689 |
T |
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| Q |
122 |
ttattgaaattagtttagtt |
141 |
Q |
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| T |
5952688 |
ttattgaaattagtttagtt |
5952669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 534
Target Start/End: Original strand, 28188175 - 28188231
Alignment:
| Q |
478 |
aggttggaggtattcttggaaaaggggcaatgaaaatagtgtataaagccattgatg |
534 |
Q |
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| T |
28188175 |
aggttggagctattcttggaaaaggggaaaagaaaacattgtataaagcaattgatg |
28188231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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