View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12973_low_8 (Length: 482)
Name: NF12973_low_8
Description: NF12973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12973_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 18053212 - 18053670
Alignment:
| Q |
16 |
tgacatgttctattgaatacaagtttgtatctctattataataa--gtaggaaactgatttgttttcaatataaaaatgtcactgtctaatttttaagca |
113 |
Q |
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| T |
18053212 |
tgacatgttctattgaatacaagtttgtatctctattataataaaagttagaaattgatttgttttcaatataaaaatgtcactgtctaatttttaagca |
18053311 |
T |
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| Q |
114 |
ttatcttttgtcttaaactaaattggaccgtaaaaatttatgaggatcatactgagttttcgctcttgcatcaaaaatgcatcttcaatggctcgagtcg |
213 |
Q |
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| T |
18053312 |
ttatcttttgtcttaaactaaattggaccgtaaaaatttatgaggatcaaactgatttttcgctcttgcatcaaaaatgcatcttcaatggctcgagtcg |
18053411 |
T |
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| Q |
214 |
ctgtaatccttccaaaatcacgttttcgccttcgtctgttcgacaaaatgtggttttccactgacctaggggtccaatgtaatagacgtgtgtttcccta |
313 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
18053412 |
ctgaaatccttccaaaatcacgttttcgcattcgtctgttcaacaaaatgtgtttttccacttacctaggggtccaatgtaatagacgtgtgttaaccta |
18053511 |
T |
|
| Q |
314 |
aattttagggaaagtttggtcagtgacgcgagcctgttgctcgtgatatgaggtcaacaaaactgaatcccttgtcctgacactcagtatagtcacaatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18053512 |
aattttagggaaagtttggtcagtgacgcgagcctgttgctcgtgatatgaggtcaacaaaactgaatcccttgtcctgacactcagtatagtcacaatg |
18053611 |
T |
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| Q |
414 |
ttgggctcatagcttgcgaagcaaggtagacaatggcaaacaccttgtatgattttcat |
472 |
Q |
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| T |
18053612 |
ttgggctcatagcttgcgaaccaaggtagacaatggcgaacaccttgtatgattttcat |
18053670 |
T |
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