View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12974_high_7 (Length: 304)

Name: NF12974_high_7
Description: NF12974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12974_high_7
NF12974_high_7
[»] chr1 (1 HSPs)
chr1 (1-295)||(26428102-26428398)
[»] chr2 (1 HSPs)
chr2 (73-221)||(28008623-28008773)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 26428102 - 26428398
Alignment:
Q  1 ctgacagtgtgctagaattaagaaagtatatagaagaaatcttctagagaagaaatcttgtagatatgtgtgaatctttgcaaggttttagggtttgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428102 ctgacagtgtgctagaattaagaaagtatatagaagaaatcttctagagaagaaatcttgtagatatgtgtgaatctttgcaaggttttagggtttgaga 26428201  T
Q  101 gagaga--ttgaagggtnnnnnnngactacgaatgactttattttgagagagaaatgagaaaaagaagtgtaaagtacagtgttgttgttgagagtacag 198  Q
    ||||||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428202 gagagagattgaagggtaaaaaaagactacgaatgactttattttgagagagaaatgagaaaaagaagtgtaaagtacagtgttgttgttgagagtacag 26428301  T
Q  199 ctatgatataaaactgatttcatcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacctatgc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428302 ctatgatataaaactgatttcatcttcactgcctcatagtagtttgtgggttgagaaaattaaggagaagtttgaggcagttacataatacctatgc 26428398  T

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Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 28008773 - 28008623
Alignment:
Q  73 aatctttgcaaggttttagggtttgagagagagattgaagggtnnnnnnngactacgaatgactttattttgagagagaaatgagaaaaagaagtgt-aa 171  Q
    ||||||||| |||||| |||||||||||||||||||||||||        |||| || ||||||||||||||||||||||||||||||||||||||| ||    
T  28008773 aatctttgctaggtttgagggtttgagagagagattgaaggggaaaaaaagactgcgtatgactttattttgagagagaaatgagaaaaagaagtgtaaa 28008674  T
Q  172 agtacagtgttgttgttgagagtacagctatg--atataaaactgatttcat 221  Q
    |||| ||||||||||  |||| ||||||||||  ||||||||||||||||||    
T  28008673 agtagagtgttgttg-agagaatacagctatgatatataaaactgatttcat 28008623  T

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