View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12975_high_4 (Length: 433)
Name: NF12975_high_4
Description: NF12975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12975_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 345
Target Start/End: Original strand, 3253887 - 3254218
Alignment:
| Q |
13 |
gattatactaagtatggtcttgttattagggagtgtcgtcacatagttgagtctagtgtttataactcatgctgagttctctaagagagaagctaatgtg |
112 |
Q |
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| T |
3253887 |
gattatacta-gtatggtcttgttattaggaagtgtcgtcacatatttgagtctagtgtttataactcatgctgaattctctaagagagaagctaatgtg |
3253985 |
T |
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| Q |
113 |
gttgctcatcatcttgctaaagctacatgtatttattcttctctctttaatgaaatgaacaagttttctttcat-nnnnnnnnnnnnnncataaatttga |
211 |
Q |
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| T |
3253986 |
gttgctcatcatcttgctaaagctacatgtatttattcttctctctttaatgaaatgaacaagttttctttcataaaaaaaaaaaaaaacattaatttga |
3254085 |
T |
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| Q |
212 |
ctaaaggataaaatagtcattttgtctgttccacaaaatacataatcagattcaagttgtatgaattctaaatttgaaagctagtgaatttgaaacagca |
311 |
Q |
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| T |
3254086 |
ctaaaggat-aaatagtcattttgtctgttccacaaaatacataatcagattcaagttgtatgaattctaaatttgaaagctagtgaatttgaaacagca |
3254184 |
T |
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| Q |
312 |
cattgcatttgattcatattactaccgtgtttac |
345 |
Q |
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| T |
3254185 |
cattgcaattgattcatattactaccgtgtttac |
3254218 |
T |
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Back To:
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 27757131 - 27757199
Alignment:
| Q |
64 |
tctagtgtttataactcatgctgagttctctaagagagaagctaatgtggttgctcatcatcttgctaa |
132 |
Q |
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||||||||||| |||||||| |||||||||||||||||| ||||| |||||| || |||||||||||| |
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| T |
27757131 |
tctagtgtttacaactcatgttgagttctctaagagagacgctaacatggttgttcttcatcttgctaa |
27757199 |
T |
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