View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12975_low_2 (Length: 766)
Name: NF12975_low_2
Description: NF12975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12975_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 2558560 - 2558671
Alignment:
| Q |
14 |
agatgaagaatacattgttcacagcaatgaagaaattgaagaatgtgaggaaatggaagagcataattactcttttgatgaagaaagtgatgcagaaatt |
113 |
Q |
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| T |
2558560 |
agatgaagaatacattgttcacagcaatgaagaaattgaagaaagtgaggaaatggatgagcataattactcttttgatgaagaaagtgatgcagaaatt |
2558659 |
T |
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| Q |
114 |
gacatggatgag |
125 |
Q |
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| T |
2558660 |
gacatggatgag |
2558671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 19330361 - 19330467
Alignment:
| Q |
14 |
agatgaagaatacattgttcacagcaatgaagaaattgaagaatgtgaggaaatggaagagcataattactcttttgatgaagaaagtgatgcagaaatt |
113 |
Q |
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| T |
19330361 |
agatgaagaatacattgttcacagcaatgaagaaattgaagaaagtgaggaaatggatgagcataattactcttt-----aagaaagtgatgcagaaatt |
19330455 |
T |
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| Q |
114 |
gacatggatgag |
125 |
Q |
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| T |
19330456 |
gacatggatgag |
19330467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 16441413 - 16441452
Alignment:
| Q |
388 |
atgcttctcctgtcccagatggtgtagcatttatgatcaa |
427 |
Q |
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| T |
16441413 |
atgcttctcccgccccagatggtgtagcatttatgatcaa |
16441452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 496
Target Start/End: Original strand, 16441461 - 16441495
Alignment:
| Q |
462 |
tctgagaagactaatgcaacctcaacatggatagc |
496 |
Q |
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| T |
16441461 |
tctgagaagactaatgtaacctcaacatggatagc |
16441495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 747
Target Start/End: Complemental strand, 43040092 - 43040055
Alignment:
| Q |
710 |
catagttaaattgaactttcatgatggaacatccttag |
747 |
Q |
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| T |
43040092 |
catagtaaaattgaactttcataatggaacatccttag |
43040055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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