View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12975_low_3 (Length: 472)

Name: NF12975_low_3
Description: NF12975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12975_low_3
NF12975_low_3
[»] chr6 (11 HSPs)
chr6 (154-454)||(14043309-14043609)
chr6 (154-454)||(13929119-13929419)
chr6 (70-157)||(14043200-14043287)
chr6 (79-157)||(13929019-13929097)
chr6 (323-430)||(14108106-14108204)
chr6 (11-75)||(14042782-14042846)
chr6 (98-151)||(13898965-13899018)
chr6 (15-74)||(14081651-14081710)
chr6 (323-425)||(13885159-13885261)
chr6 (154-232)||(13887685-13887763)
chr6 (98-140)||(14012977-14013019)
[»] scaffold0004 (2 HSPs)
scaffold0004 (156-220)||(89550-89614)
scaffold0004 (227-304)||(89307-89384)
[»] chr4 (1 HSPs)
chr4 (227-304)||(23534766-23534843)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 154 - 454
Target Start/End: Original strand, 14043309 - 14043609
Alignment:
Q  154 tttctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttacttccctttcaagaaccgtctttgcctcgaccttt 253  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14043309 tttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaaccggtgttacttccctttcaagaaccgtctttgccttgaccttt 14043408  T
Q  254 aagatgaaactgtcgtctgaggccactccaagttgctaggcggtacccattggatgggacagtattactgctaaatttcaatgacggtgaccatgtacac 353  Q
    ||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14043409 aagttgaaactgccgtctgaggccactccaagatgctagacggtacccattggatgggacagtattactgctaaatttcaatgacggtaaccatgtacac 14043508  T
Q  354 aataaactagcagatcatacaataattttttatataaaacagataacattcaaattaaccgatgttattttcgaacaaacaaattgaattgtgtcggggg 453  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14043509 aataaactagcagatcatacaatatttttttatataaaacagataaaattcaaattaacggatgttattttcgaacaaacaaattgaattgtgtcggggg 14043608  T
Q  454 t 454  Q
    |    
T  14043609 t 14043609  T

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Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 154 - 454
Target Start/End: Original strand, 13929119 - 13929419
Alignment:
Q  154 tttctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttacttccctttcaagaaccgtctttgcctcgaccttt 253  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |    
T  13929119 tttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaatctgtgttacttccctttcaagaaccgtctttgcctcgacctgt 13929218  T
Q  254 aagatgaaactgtcgtctgaggccactccaagttgctaggcggtacccattggatgggacagtattactgctaaatttcaatgacggtgaccatgtacac 353  Q
    ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  13929219 aagttgaaactgccgtctgaggccactccaagttgctagacggtacccattggatgggacagtattactgctaaatttgaatgacggtaaccatgtacac 13929318  T
Q  354 aataaactagcagatcatacaataattttttatataaaacagataacattcaaattaaccgatgttattttcgaacaaacaaattgaattgtgtcggggg 453  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13929319 aataaactagcagatcatacaacaattttttatataaaaccgataacattcaaattaacggatgttattttcgaacaaacaaattgaattgtgtcggggg 13929418  T
Q  454 t 454  Q
    |    
T  13929419 t 13929419  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 14043200 - 14043287
Alignment:
Q  70 tatacaaacctagaacttcttgatattattgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtatttgctttc 157  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14043200 tatacaaacctataacttcttgatattattgcagggtggatttgtgaggaaaataattgttcaagaatttgtcaaggtatttgctttc 14043287  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 13929019 - 13929097
Alignment:
Q  79 ctagaacttcttgatattattgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtatttgctttc 157  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13929019 ctagaacttcttgatattattgcagggtggatttgtgaggaaaataattgttcaagaatttgtcaaggtatttgctttc 13929097  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 323 - 430
Target Start/End: Original strand, 14108106 - 14108204
Alignment:
Q  323 gctaaatttcaatgacggtgaccatgtacacaataaactagcagatcatacaataattttttatataaaacagataacattcaaattaaccgatgttatt 422  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| |||| |||||||||    
T  14108106 gctagatttcaatgacggtgaccatgtacacaataaactagcagatcatac---------ttatataaaacagataacattcaaactaacagatgttatt 14108196  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 14042782 - 14042846
Alignment:
Q  11 cagagaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattgggatgtataca 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14042782 cagagaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattggcatgtataca 14042846  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 13899018 - 13898965
Alignment:
Q  98 ttgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtattt 151  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13899018 ttgcagggtggatttgtgaggaaaataattgttcaagaatttgccaaggtattt 13898965  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 14081651 - 14081710
Alignment:
Q  15 gaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattgggatgtatac 74  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  14081651 gaaaataaatggtggatgaaaataagaacatgagatgatgtgtaaaattggcatgtatac 14081710  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 13885261 - 13885159
Alignment:
Q  323 gctaaatttcaatgacggtgaccatgtacacaataaactagcagatcatacaataattttttatataaaacagataacattcaaattaaccgatgttatt 422  Q
    ||||||| ||||||||  ||| ||||| ||||| | | |||||||||||| |||||||||  |||| |||||||| |||| ||||||||| |||||||||    
T  13885261 gctaaatctcaatgacaatgatcatgtgcacaacagagtagcagatcatataataattttcgatattaaacagattacatccaaattaacggatgttatt 13885162  T
Q  423 ttc 425  Q
    |||    
T  13885161 ttc 13885159  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 13887763 - 13887685
Alignment:
Q  154 tttctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttacttccctttcaaga 232  Q
    ||||||||| || ||||||| ||||||||||||||||||  ||||| ||  ||| | ||||||| ||| ||||||||||    
T  13887763 tttctccccggttccatccaggtgaccctgtacgaaatgcccacccattctactcatcggtgtttcttacctttcaaga 13887685  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 14013019 - 14012977
Alignment:
Q  98 ttgcagggtggatttgtcaggaaaataattgttcaagaatttg 140  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||    
T  14013019 ttgcaggatggatttgtcaggaaattaattgttcaataatttg 14012977  T

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Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 89614 - 89550
Alignment:
Q  156 tctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttact 220  Q
    |||||||||||||||||| ||||||||||||||||||  ||||| || || ||||||||||||||    
T  89614 tctcccccgtgccatccacgtgaccctgtacgaaatgcccacccattcgagtaaccggtgttact 89550  T

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Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 89384 - 89307
Alignment:
Q  227 tcaagaaccgtctttgcctcgacctttaagatgaaactgtcgtctgaggccactccaagttgctaggcggtacccatt 304  Q
    |||||||||||||||||||| |||||||||  ||||| | ||| ||||||| |||| |||| || | |||||||||||    
T  89384 tcaagaaccgtctttgcctccacctttaagtcgaaaccgccgtttgaggccgctccgagtttcttgacggtacccatt 89307  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 23534766 - 23534843
Alignment:
Q  227 tcaagaaccgtctttgcctcgacctttaagatgaaactgtcgtctgaggccactccaagttgctaggcggtacccatt 304  Q
    |||||||||||||||||||| || ||||||  ||||| | |||||| ||||||||| ||||||| | |||||||||||    
T  23534766 tcaagaaccgtctttgcctccacttttaagtcgaaaccgccgtctgtggccactccgagttgcttgacggtacccatt 23534843  T

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