View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12975_low_5 (Length: 320)

Name: NF12975_low_5
Description: NF12975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12975_low_5
NF12975_low_5
[»] chr3 (21 HSPs)
chr3 (1-320)||(6093220-6093541)
chr3 (38-281)||(23937144-23937388)
chr3 (37-201)||(29201433-29201597)
chr3 (59-281)||(30766218-30766431)
chr3 (178-281)||(188593-188699)
chr3 (141-281)||(22759160-22759301)
chr3 (174-281)||(37611473-37611583)
chr3 (253-320)||(918794-918862)
chr3 (253-320)||(44072784-44072852)
chr3 (150-236)||(50771294-50771380)
chr3 (55-236)||(52853491-52853670)
chr3 (1-37)||(42616065-42616101)
chr3 (55-218)||(54793030-54793193)
chr3 (150-236)||(16341776-16341862)
chr3 (66-196)||(54513452-54513582)
chr3 (150-207)||(32755637-32755694)
chr3 (150-207)||(50741474-50741531)
chr3 (172-236)||(11383255-11383319)
chr3 (150-218)||(16496011-16496079)
chr3 (158-218)||(31369082-31369142)
chr3 (150-218)||(35087903-35087971)
[»] chr8 (19 HSPs)
chr8 (121-320)||(4634863-4635050)
chr8 (55-320)||(12661034-12661287)
chr8 (174-281)||(11696962-11697072)
chr8 (253-320)||(20662995-20663063)
chr8 (253-320)||(30548358-30548426)
chr8 (253-320)||(44213112-44213180)
chr8 (135-236)||(22333156-22333257)
chr8 (1-37)||(27631369-27631405)
chr8 (150-218)||(41628757-41628825)
chr8 (150-236)||(19247974-19248060)
chr8 (150-236)||(19321158-19321244)
chr8 (140-218)||(30826311-30826389)
chr8 (135-236)||(6477528-6477629)
chr8 (71-196)||(22946245-22946370)
chr8 (135-236)||(29433890-29433991)
chr8 (1-33)||(11695080-11695112)
chr8 (172-236)||(38993571-38993635)
chr8 (150-218)||(42810990-42811058)
chr8 (172-236)||(44599590-44599654)
[»] chr4 (20 HSPs)
chr4 (44-287)||(56541450-56541698)
chr4 (174-281)||(33486459-33486569)
chr4 (174-281)||(43014669-43014779)
chr4 (174-281)||(16895818-16895928)
chr4 (251-320)||(28120261-28120331)
chr4 (253-320)||(10259401-10259469)
chr4 (253-320)||(24077470-24077538)
chr4 (253-320)||(26924340-26924408)
chr4 (253-320)||(43332507-43332575)
chr4 (253-320)||(51452574-51452642)
chr4 (253-320)||(21564986-21565054)
chr4 (135-236)||(19831459-19831560)
chr4 (1-37)||(16893869-16893905)
chr4 (150-236)||(13628193-13628279)
chr4 (150-236)||(28973203-28973289)
chr4 (150-236)||(33503059-33503145)
chr4 (150-218)||(740490-740558)
chr4 (1-33)||(33488420-33488452)
chr4 (172-236)||(38008007-38008071)
chr4 (1-33)||(43016630-43016662)
[»] chr6 (17 HSPs)
chr6 (44-281)||(2624838-2625078)
chr6 (121-281)||(22975834-22975997)
chr6 (121-281)||(23812404-23812567)
chr6 (174-281)||(11470851-11470960)
chr6 (253-320)||(250020-250088)
chr6 (253-320)||(12579854-12579922)
chr6 (174-281)||(18389232-18389341)
chr6 (253-320)||(33979081-33979149)
chr6 (239-281)||(11272683-11272725)
chr6 (179-275)||(33300486-33300585)
chr6 (150-236)||(4424592-4424677)
chr6 (150-236)||(30044314-30044400)
chr6 (150-218)||(1073336-1073404)
chr6 (150-218)||(2521271-2521339)
chr6 (1-37)||(11266555-11266591)
chr6 (150-218)||(18599059-18599127)
chr6 (150-218)||(25540179-25540247)
[»] scaffold0103 (1 HSPs)
scaffold0103 (44-244)||(12704-12903)
[»] chr7 (22 HSPs)
chr7 (38-281)||(23476692-23476927)
chr7 (174-281)||(27840367-27840477)
chr7 (174-281)||(12960460-12960570)
chr7 (173-281)||(42298912-42299023)
chr7 (253-320)||(20765507-20765575)
chr7 (253-320)||(29491085-29491153)
chr7 (253-320)||(19033723-19033791)
chr7 (253-320)||(20720845-20720913)
chr7 (253-320)||(34282171-34282239)
chr7 (150-236)||(5962822-5962908)
chr7 (150-236)||(42687678-42687764)
chr7 (38-95)||(23477027-23477084)
chr7 (268-320)||(33230029-33230082)
chr7 (150-236)||(11499985-11500071)
chr7 (150-236)||(42244907-42244993)
chr7 (150-218)||(6911544-6911612)
chr7 (158-218)||(14308987-14309047)
chr7 (135-207)||(17478000-17478072)
chr7 (135-207)||(17575142-17575214)
chr7 (150-218)||(23766508-23766576)
chr7 (1-33)||(27838484-27838516)
chr7 (150-218)||(47573522-47573590)
[»] chr5 (18 HSPs)
chr5 (174-281)||(22602713-22602823)
chr5 (174-281)||(36366203-36366313)
chr5 (141-281)||(38041596-38041739)
chr5 (141-281)||(2366956-2367099)
chr5 (253-320)||(37464476-37464544)
chr5 (150-236)||(3028842-3028928)
chr5 (150-236)||(35539964-35540050)
chr5 (3-37)||(29251710-29251744)
chr5 (135-236)||(3150649-3150750)
chr5 (279-320)||(18037307-18037348)
chr5 (150-218)||(3397201-3397269)
chr5 (150-218)||(7285765-7285833)
chr5 (150-218)||(19448091-19448159)
chr5 (1-33)||(22604674-22604706)
chr5 (150-218)||(33611203-33611271)
chr5 (172-236)||(34374425-34374489)
chr5 (66-146)||(35539429-35539509)
chr5 (1-33)||(36368165-36368197)
[»] chr1 (13 HSPs)
chr1 (174-281)||(3929827-3929937)
chr1 (174-281)||(20767409-20767519)
chr1 (173-281)||(26429201-26429312)
chr1 (141-281)||(23909821-23909964)
chr1 (141-275)||(34266000-34266137)
chr1 (150-236)||(24294659-24294745)
chr1 (1-33)||(3931751-3931783)
chr1 (150-218)||(13662458-13662526)
chr1 (150-218)||(28565768-28565836)
chr1 (158-218)||(31619827-31619887)
chr1 (150-218)||(34692245-34692313)
chr1 (150-218)||(43254737-43254805)
chr1 (150-218)||(52521620-52521688)
[»] chr2 (18 HSPs)
chr2 (141-281)||(1691532-1691675)
chr2 (174-281)||(7364648-7364757)
chr2 (260-320)||(24278957-24279018)
chr2 (122-202)||(7984174-7984254)
chr2 (253-320)||(11866294-11866362)
chr2 (253-320)||(35357687-35357755)
chr2 (210-281)||(32726106-32726180)
chr2 (66-196)||(36632509-36632639)
chr2 (268-320)||(3711069-3711122)
chr2 (1-37)||(7362777-7362813)
chr2 (121-165)||(25283337-25283381)
chr2 (150-236)||(26827657-26827743)
chr2 (150-236)||(30570599-30570685)
chr2 (150-236)||(30572479-30572565)
chr2 (150-236)||(33663843-33663929)
chr2 (94-147)||(24278883-24278936)
chr2 (66-111)||(45204563-45204608)
chr2 (150-218)||(30566932-30567000)
[»] scaffold0242 (1 HSPs)
scaffold0242 (150-236)||(3501-3587)
[»] scaffold0016 (1 HSPs)
scaffold0016 (71-196)||(101383-101508)
[»] scaffold0006 (1 HSPs)
scaffold0006 (150-218)||(152220-152288)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 6093541 - 6093220
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctataggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6093541 tgtcacccaattgattagcctatgatcttaacctataggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaa 6093442  T
Q  101 ttctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaa 200  Q
     ||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||    
T  6093441 ctctatgacaataacgctcacttttataatttcggctaatatgtaatcgtaattttcacattgtta-ttcattcattggttccaattagtttcatcttaa 6093343  T
Q  201 ttttaataatgttttcctggactcatgaacaaaatatatct---tttcatgaatcaagacttggtaaagctttcataaatattt-gataaagataaatag 296  Q
    || | || |||||| ||||| |||||||||||||| ||||    ||||||||||||||||||| || ||||||||||||||||| | |||| ||   ||     
T  6093342 ttattatgatgttt-cctggtctcatgaacaaaatgtatccatatttcatgaatcaagacttgatagagctttcataaatattttggtaaaaatttctaa 6093244  T
Q  297 tgtttgtgcaatattcattaattt 320  Q
    |||||||||||||| |||||||||    
T  6093243 tgtttgtgcaatatccattaattt 6093220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 38 - 281
Target Start/End: Original strand, 23937144 - 23937388
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgact 137  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||||  || || |||||||||||| ||||    
T  23937144 ggatgttgtttctttgattcattt-gtgtgatgtaaatattgatgttaaaccatttttggtaattctatgacaatggcgtttgcttttataattttgact 23937242  T
Q  138 aatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatat 237  Q
    |||||||||||||||||||||| |||||  ||  |||||||||| || ||||||||||||||||| | || ||||||| |||| ||||||||||||||||    
T  23937243 aatatgtaatcgtaatttgcacgttattgtttctttcattggtt-cagttagtttcatcttaattattattatgtttttctggtctcatgaacaaaatat 23937341  T
Q  238 at---cttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
    ||   |||||||||||||||||||| ||| |||||||||||||||||    
T  23937342 atctccttttcatgaatcaagacttagtagagctttcataaatattt 23937388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 29201433 - 29201597
Alignment:
Q  37 aggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgac 136  Q
    |||||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||  |||| || ||||||||||||| | |    
T  29201433 aggatgctgtttctttggttcattttgtgtgatgtgaataatggtgttaatcccttttttgtaactctatgacggtaaccctcacttttataattttggc 29201532  T
Q  137 taatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaat 201  Q
    ||| ||||||| |||||||||||||||||||||  ||||||| |||||||| |||||||||||||    
T  29201533 taacatgtaattgtaatttgcacattattagttccttcattgattccaatttgtttcatcttaat 29201597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 281
Target Start/End: Original strand, 30766218 - 30766431
Alignment:
Q  59 ttttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgca 158  Q
    ||||||||||||| ||||||||||||||| |||||||||| | ||||||||| || ||||  |||| ||||||| |||||||||||||||| |||||| |    
T  30766218 ttttgtgtgatgtgaatattggtgttaattcctttttggtgactctatgacactagcgctcgctttgataattttgactaatatgtaatcgaaatttgta 30766317  T
Q  159 cattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaag 255  Q
    ||            ||||||||| |||||||||| ||||||||| | ||  ||||| ||||  |||||||||||||||||   ||||||||| |||||||    
T  30766318 ca------------tcattggtttcaattagtttaatcttaattattatgttgtttgcctgatctcatgaacaaaatatatgctcttttcatcaatcaag 30766405  T
Q  256 acttggtaaagctttcataaatattt 281  Q
    ||||||||| |||||  |||||||||    
T  30766406 acttggtaaggctttggtaaatattt 30766431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 188593 - 188699
Alignment:
Q  178 ggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcata 274  Q
    ||||||||||||||||| ||||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| | ||||||||    
T  188593 ggttccaattagtttcaacttaattatgatcatgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagaactttcata 188692  T
Q  275 aatattt 281  Q
    |||||||    
T  188693 aatattt 188699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 22759301 - 22759160
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat- 239  Q
    |||||||||||||||||| |||||| |||  ||||| ||||||||||||||| ||||||||| | ||  |||||||     ||| ||||||||||||||     
T  22759301 atgtaatcgtaatttgcagattattggttccttcatcggttccaattagtttaatcttaattattatgttgttttctcaatctcttgaacaaaatatatc 22759202  T
Q  240 cttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
    ||||||||||||||||||  ||||||| ||| ||||||||||    
T  22759201 cttttcatgaatcaagacccggtaaagttttgataaatattt 22759160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 37611583 - 37611473
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||| |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| ||||||    
T  37611583 cattggtttcaattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagcttt 37611484  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  37611483 cataaatattt 37611473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 918794 - 918862
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  918794 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 918862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 44072852 - 44072784
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  44072852 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 44072784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 50771380 - 50771294
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  50771380 taatttgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 50771294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 236
Target Start/End: Complemental strand, 52853670 - 52853491
Alignment:
Q  55 ttcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatt 154  Q
    |||||||||| ||||||||||||||| |  |||||||||||||| | ||||||| | |  |  ||  ||||||||   | |||| |||||||   ||||     
T  52853670 ttcattttgtctgatgtaaatattggcgaaaatccctttttggttagtctatgaaacttgcagtt--ttttataaacccaactattatgtaacgttaatc 52853573  T
Q  155 tgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  52853572 tgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 52853491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42616101 - 42616065
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42616101 tgtcacccaattgattcgcttatgatcttaacctata 42616065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 54793193 - 54793030
Alignment:
Q  55 ttcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatt 154  Q
    |||||||||| |||||||||||||||    |||| ||||||||| | ||||||||| |  |  |  |||||||||  |  |||| |||||||   ||||     
T  54793193 ttcattttgtctgatgtaaatattggcaaaaatctctttttggttagtctatgacacttgcagtctcttttataaacttaactattatgtaacgttaatc 54793094  T
Q  155 tgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  54793093 tgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcct 54793030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 16341776 - 16341862
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  16341776 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 16341862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 54513452 - 54513582
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| ||| ||   ||||||||||| |  |||||||||||| |||||  | ||| |||    
T  54513452 tgatgtaaatatgggtatcaatccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattcacgcatcatt 54513551  T
Q  166 agtttattcattggttccaattagtttcatc 196  Q
     |||  || |||||||||||||  |||||||    
T  54513552 ggttcctttattggttccaattgttttcatc 54513582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 32755637 - 32755694
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaat 207  Q
    ||||||||||||| || |||  ||||||||||||||||| | |||| |||||||||||    
T  32755637 taatttgcacattgttggttccttcattggttccaattaatatcatgttaattttaat 32755694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 50741474 - 50741531
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaat 207  Q
    ||||||||||||| || |||  ||||||||||||||||||| |||| |||||| ||||    
T  50741474 taatttgcacattgttggttccttcattggttccaattagtatcatgttaattataat 50741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 11383255 - 11383319
Alignment:
Q  172 ttcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  11383255 ttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 11383319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 16496011 - 16496079
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  16496011 taatctgcacattgttggttgcttcattggttccaattagtatcatgttaattataatgttgttttcct 16496079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 31369142 - 31369082
Alignment:
Q  158 acattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||| || ||| |||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  31369142 acattgttggttcattcattggttccaattagtatcatgttaattgtaatgttgttttcct 31369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 35087971 - 35087903
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  35087971 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 35087903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 121 - 320
Target Start/End: Complemental strand, 4635050 - 4634863
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctgg 220  Q
    |||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||     
T  4635050 cttttataattttgactaatatgtaatcgtaatttgcacattatt------------ggttccaattagtttcatcttaattttaataatgttttcctga 4634963  T
Q  221 actcatgaacaaaatatatcttttcatgaatcaagacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4634962 actcatgaacaaaatatatcttttcatgaatcaatacttggtaaagctttcataaatatttgataaagataaatagtgtttgtgcaatattcattaattt 4634863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 320
Target Start/End: Complemental strand, 12661287 - 12661034
Alignment:
Q  55 ttcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatt 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||| | | ||  |||||||    | | |||||||||||||||||||    
T  12661287 ttcattttgtgtgatgtaaatattggtgttaattcctttttggtaactcggtgacaacatcactcgcttttat----ttggctaatatgtaatcgtaatt 12661192  T
Q  155 tgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatctt---ttcatgaat 251  Q
    |||||||||||            ||||||||||||||||||||||||| | || |||||||||| |  | |||||||||| |||| ||   |||||||||    
T  12661191 tgcacattatt------------ggttccaattagtttcatcttaattattatgatgttttcctagtattatgaacaaaacatatgttgttttcatgaat 12661104  T
Q  252 caagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||||| || |||||||||||||||| |||||| ||   || ||||||||||||||||||||||||    
T  12661103 caagacttggaaaggctttcataaatatttggataaatatttctaatgtttgtgcaatattcattaattt 12661034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 11696962 - 11697072
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  11696962 cattggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 11697061  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  11697062 cataaatattt 11697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 20663063 - 20662995
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  20663063 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 20662995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 30548426 - 30548358
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  30548426 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 30548358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 44213180 - 44213112
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  44213180 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 44213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 22333257 - 22333156
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaa 234  Q
    ||||||||||||   |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||    
T  22333257 actaatatgtaacgttaatctgcacattgttggttctttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaa 22333158  T
Q  235 ta 236  Q
    ||    
T  22333157 ta 22333156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27631369 - 27631405
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27631369 tgtcacccaattgatccgcctatgatcttaacctata 27631405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 41628757 - 41628825
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| ||||||||||| |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  41628757 taatctgcacattattggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 41628825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 19247974 - 19248060
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| ||  ||  ||||||||||||||||||| |||| | |||||||||  |||||||||   ||| |||||||||||    
T  19247974 taatttgcacattgttgattccttcattggttccaattagtatcatgtaaattttaatgttgttttcctaatctcttgaacaaaata 19248060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 19321158 - 19321244
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| ||  ||  ||||||||||||||||||| |||| | |||||||||  |||||||||   ||| |||||||||||    
T  19321158 taatttgcacattgttgattccttcattggttccaattagtatcatgtaaattttaatgttgttttcctaatctcttgaacaaaata 19321244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 30826311 - 30826389
Alignment:
Q  140 tatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||||||  ||||||| ||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  30826311 tatgtaatgttaatttgtacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 30826389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 6477629 - 6477528
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaa 234  Q
    |||| ||||||||  |||| ||||||| ||| |||  ||||||| ||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||    
T  6477629 actattatgtaatgttaatctgcacatcattggttccttcattgattccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaa 6477530  T
Q  235 ta 236  Q
    ||    
T  6477529 ta 6477528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 196
Target Start/End: Complemental strand, 22946370 - 22946245
Alignment:
Q  71 taaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattattagttt 170  Q
    ||||||| ||| | ||||| |||||||||| ||||| |||| |||| |   ||||||||||| || |||||||||||| |||||  ||||| |||  ||     
T  22946370 taaatatgggtatcaatccttttttggtaactctataacaacaacgttcttttttataattttgaataatatgtaatcataattcacacatcattgtttc 22946271  T
Q  171 attcattggttccaattagtttcatc 196  Q
     || |||||||||||||  |||||||    
T  22946270 ctttattggttccaattgttttcatc 22946245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 29433890 - 29433991
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaa 234  Q
    |||| ||||||||  |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  || ||||||   ||| |||||||||    
T  29433890 actattatgtaatgttaatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgctttcctaatctcttgaacaaaa 29433989  T
Q  235 ta 236  Q
    ||    
T  29433990 ta 29433991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11695080 - 11695112
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  11695080 tgtcacccaattgattcgtctatgatcttaacc 11695112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 38993571 - 38993635
Alignment:
Q  172 ttcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  38993571 ttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 38993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 42811058 - 42810990
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  42811058 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 42810990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 44599590 - 44599654
Alignment:
Q  172 ttcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  44599590 ttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 44599654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 44 - 287
Target Start/End: Original strand, 56541450 - 56541698
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||||||  ||||||| ||||||||| ||||| |||| ||||||||| || | ||| |||||||||||| | |||||||     
T  56541450 tgtttctttccttcattttgtgtgatgcgaatattgatgttaatccttttttcgtaactctatgacagtagcacttgcttttataatttgggctaatata 56541549  T
Q  144 taatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata----- 238  Q
    ||||||||||||||||||| || |||  ||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||         
T  56541550 taatcgtaatttgcacattcttggttccttcattggttccaattagtttcatcttaattattatgatgttttcctggtctcatgaacaaaatatatgttt 56541649  T
Q  239 tcttttcatgaatcaagacttggtaaagctttcataaatatttgataaa 287  Q
    | |||||||||| |||||| ||||||  |||||||||||| ||||||||    
T  56541650 ttttttcatgaaacaagacctggtaagactttcataaataattgataaa 56541698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 33486569 - 33486459
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  33486569 cattggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 33486470  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  33486469 cataaatattt 33486459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 43014779 - 43014669
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  43014779 cattggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 43014680  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  43014679 cataaatattt 43014669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 16895818 - 16895928
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||||||||||||| || ||||||| | || ||||||||||||  ||||||||||  ||||||   ||||||||||||||||||||||| ||||||    
T  16895818 cattggttccaattagttgcaacttaattattatcatgttttcctggtttcatgaacaaggtatatcctcttttcatgaatcaagacttggtagagcttt 16895917  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  16895918 cataaatattt 16895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 28120331 - 28120261
Alignment:
Q  251 tcaagacttggtaaagctttcataaatatt-tgataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    ||||||||||||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||    
T  28120331 tcaagacttggtaaaactttcataaatattctgataaagatttataatgtttgtgcaatattcattaattt 28120261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 10259469 - 10259401
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  10259469 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 10259401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 24077538 - 24077470
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  24077538 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 24077470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 26924408 - 26924340
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  26924408 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 26924340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 43332507 - 43332575
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  43332507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 43332575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 51452574 - 51452642
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  51452574 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 51452642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 21564986 - 21565054
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||| ||||||||||||||||||    
T  21564986 aagacttgataaaactttcataaatattttgataaagatttataatgtttatgcaatattcattaattt 21565054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 19831560 - 19831459
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaa 234  Q
    |||| ||||||||  |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||    
T  19831560 actattatgtaatgttaatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaa 19831461  T
Q  235 ta 236  Q
    ||    
T  19831460 ta 19831459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16893869 - 16893905
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16893869 tgtcacccaattgattcgtctatgatcttaacctata 16893905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 13628193 - 13628279
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| || |||  ||||||| ||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  13628193 taatttgcacattgttggttccttcattgattccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 13628279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 28973203 - 28973289
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  28973203 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 28973289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 33503145 - 33503059
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  33503145 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 33503059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 740558 - 740490
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| ||||||||||| |||  ||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  740558 taatctgcacattattggttccttcattggttcaaattagtatcatgttaattataatgttgttttcct 740490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33488452 - 33488420
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33488452 tgtcacccaattgattcgtctatgatcttaacc 33488420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 38008007 - 38008071
Alignment:
Q  172 ttcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  38008007 ttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 38008071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43016662 - 43016630
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  43016662 tgtcacccaattgattcgtctatgatcttaacc 43016630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 44 - 281
Target Start/End: Complemental strand, 2625078 - 2624838
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||| ||| |||||| ||||| |||||||||| |||| ||||||||| || | ||| |||||||||||| | ||||||||    
T  2625078 tgtttctttcgttcattttgtgtgctgtgaatatttgtgttgatccctttttcgtaactctatgacagtagcacttgcttttataatttgggctaatatg 2624979  T
Q  144 taatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata----t 239  Q
    |||| ||||||| |||||| || |||  |||| ||||||||||||||||| ||||||| || || |||||||| ||| |||||||||||||||||    |    
T  2624978 taattgtaattttcacattttttgttccttcaatggttccaattagtttcttcttaatctt-atgatgttttcgtggtctcatgaacaaaatatatgttt 2624880  T
Q  240 cttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     ||||||| |||||||||||||||| ||||||||||||||||    
T  2624879 tttttcataaatcaagacttggtaaggctttcataaatattt 2624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 22975997 - 22975834
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctgg 220  Q
    |||||||||||| | ||||||||||||||||||||||||||| || |||  |||| ||| ||||||||||||||||||||| || || |||||||| |||    
T  22975997 cttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaatctt-atgatgttttcgtgg 22975899  T
Q  221 actcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||||||    
T  22975898 tctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattt 22975834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 23812404 - 23812567
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctgg 220  Q
    |||||||||||| | ||||||||||||||||||||||||||| || |||  |||| ||| ||||||||||||||||||||| || || |||||||| |||    
T  23812404 cttttataatttgggctaatatgtaatcgtaatttgcacattttttgttccttcagtggctccaattagtttcatcttaatctt-atgatgttttcgtgg 23812502  T
Q  221 actcatgaacaaaatata-----tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     |||||||||||||||||     | ||||||| ||||||||| ||||||  |||||||||||||||    
T  23812503 tctcatgaacaaaatatatgtttttttttcataaatcaagac-tggtaagactttcataaatattt 23812567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 11470960 - 11470851
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatctt---ttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| |||| || | || ||||||||||||  ||||||||||| |||||| |   ||||||||||||||||||||| ||||||    
T  11470960 cattggttccaattagtttcaactta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctctgttcatgaatcaagacttggtagagcttt 11470862  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  11470861 cataaatattt 11470851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 250020 - 250088
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  250020 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 250088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 12579922 - 12579854
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  12579922 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 12579854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 18389341 - 18389232
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  18389341 cattggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 18389243  T
Q  271 cataaatattt 281  Q
      |||||||||    
T  18389242 ggtaaatattt 18389232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 33979081 - 33979149
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  33979081 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 33979149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 11272683 - 11272725
Alignment:
Q  239 tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  11272683 tcttttcatgaatcaagatttggtagagctttcataaatattt 11272725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 33300486 - 33300585
Alignment:
Q  179 gttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatat---cttttcatgaatcaagacttggtaaagctttcataa 275  Q
    |||||||||||||| ||||||||| | ||  ||| ||| ||  ||||||||||||||||||   ||||||||||||||||||  ||||| ||||| ||||    
T  33300486 gttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatgctcttttcatgaatcaagaccaggtaaggctttgataa 33300585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 4424592 - 4424677
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| ||||||||||| |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  4424592 taatctgcacattattggttccttcattggttccaattagtatcat-ttaattgtaatgttgttttcctaatctcttgaacaaaata 4424677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 30044314 - 30044400
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  30044314 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 30044400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 1073404 - 1073336
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  1073404 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 1073336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 2521271 - 2521339
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||||| ||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  2521271 taatttgtacattgttggttccttcattggttccaattagtatcatattaattgtaatgttgttttcct 2521339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11266555 - 11266591
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||  ||||||||||||||||||    
T  11266555 tgtcacccaattgattcttctatgatcttaacctata 11266591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 18599127 - 18599059
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  18599127 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 18599059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 25540179 - 25540247
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  25540179 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcct 25540247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 44 - 244
Target Start/End: Original strand, 12704 - 12903
Alignment:
Q  44 tgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatg 143  Q
    |||||||||  ||||||||||||| ||| |||||| ||||| |||||||||| |||| ||||||||| || | ||| |||||||||||| | ||||||||    
T  12704 tgtttctttcgttcattttgtgtgctgtgaatatttgtgttgatccctttttcgtaactctatgacagtagcacttgcttttataatttgggctaatatg 12803  T
Q  144 taatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatcttt 243  Q
    ||||||||||||||||||| || |||  |||  |||||||||||| |||||||||||| || || |||||||| ||| |||||||||||||||||| |||    
T  12804 taatcgtaatttgcacattttttgttccttcggtggttccaattaatttcatcttaatctt-atgatgttttcgtggtctcatgaacaaaatatatgttt 12902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 281
Target Start/End: Complemental strand, 23476927 - 23476692
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgact 137  Q
    |||||||||||||||| ||||||||||  ||||| |||||||||||||| |||||||| |||| ||||||||| || ||||  ||||||||||     ||    
T  23476927 ggatgttgtttctttggttcattttgtaggatgtgaatattggtgttaaccccttttttgtaactctatgacagtagcgctcgcttttataatgatagct 23476828  T
Q  138 aatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaatt-ttaataatgttttcctggactcatgaacaaaata 236  Q
    |||||||||||||||||| |||            ||||||||||||||||||||| ||||||||| |||    | ||||  ||  |||||||||||||||    
T  23476827 aatatgtaatcgtaatttacac------------ttcattggttccaattagtttaatcttaattattatgtttttttttttgttctcatgaacaaaata 23476740  T
Q  237 ta---tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
    ||   | ||||||||||||||||||||||||  |||| ||||||||||    
T  23476739 tatgttattttcatgaatcaagacttggtaagactttgataaatattt 23476692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 27840367 - 27840477
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  27840367 cattggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 27840466  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  27840467 cataaatattt 27840477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 12960460 - 12960570
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||  |||||||||||| ||||||| | || |||||||||||   ||||||||| | ||||||   ||||||||||||||||||||||| ||||||    
T  12960460 cattggtctcaattagtttcaacttaattatgatcatgttttcctgatttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagcttt 12960559  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  12960560 cataaatattt 12960570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 42299023 - 42298912
Alignment:
Q  173 tcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata---tcttttcatgaatcaagacttggtaaagctt 269  Q
    |||||||||||||||||||| ||||||||| | ||  ||||||||||  |||||| ||||||||||   |||||||| |||||||||| |||||| | ||    
T  42299023 tcattggttccaattagtttaatcttaattattatgttgttttcctgatctcatggacaaaatatatgctcttttcaagaatcaagacctggtaatgttt 42298924  T
Q  270 tcataaatattt 281  Q
    | ||||||||||    
T  42298923 tgataaatattt 42298912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 20765507 - 20765575
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  20765507 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 20765575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 29491085 - 29491153
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  29491085 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 29491153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 19033791 - 19033723
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||    
T  19033791 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaattt 19033723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 20720845 - 20720913
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||||    
T  20720845 aagacttgataaagctttcataaatattttgataaaaatttataatgtttgtgcaatattcattaattt 20720913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 34282239 - 34282171
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||| ||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  34282239 aagacttgataaaactttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 34282171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 5962822 - 5962908
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  5962822 taatttgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 5962908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 42687678 - 42687764
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  |||||||||||||||||||||||| |||||| ||||  |||||||||   ||| |||||||||||    
T  42687678 taatctgcacattgttggttccttcattggttccaattagtttcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 42687764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 23477084 - 23477027
Alignment:
Q  38 ggatgttgtttctttgattcattttgtgtgatgtaaatattggtgttaatcccttttt 95  Q
    |||||||||||||||| |||||||| |  ||||| |||||||||||||| ||||||||    
T  23477084 ggatgttgtttctttggttcattttttaggatgtgaatattggtgttaaccccttttt 23477027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 33230082 - 33230029
Alignment:
Q  268 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  33230082 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 33230029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 11499985 - 11500071
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  11499985 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 11500071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 42244993 - 42244907
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || ||| |||||||||||||||||||| |||| |||||| ||||  || ||||||   ||| |||||||||||    
T  42244993 taatctgcacattgttggttcattcattggttccaattagtatcatgttaattataatgttgctttcctaatctcttgaacaaaata 42244907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 6911612 - 6911544
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| ||||||||||| |||  ||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  6911612 taatctgcacattattggttccttcattggttcaaattagtatcatgttaattataatgttgttttcct 6911544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 14308987 - 14309047
Alignment:
Q  158 acattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||| ||||||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  14308987 acattgttagttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 14309047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 17478000 - 17478072
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaat 207  Q
    |||| ||||||||  |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||    
T  17478000 actattatgtaatgttaatctgcacattgttggttccttcattggttccaattagtatcatgttaattataat 17478072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 17575214 - 17575142
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaat 207  Q
    |||| ||||||||  |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||    
T  17575214 actattatgtaatgttaatctgcacattgttggttccttcattggttccaattagtatcatgttaattataat 17575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 23766576 - 23766508
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||||| ||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  23766576 taatttgtacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 23766508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27838484 - 27838516
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  27838484 tgtcacccaattgattcgtctatgatcttaacc 27838516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 47573590 - 47573522
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| ||||||||||| |||  ||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  47573590 taatctgcacattattggttccttcattggttcaaattagtatcatgttaattataatgttgttttcct 47573522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 22602823 - 22602713
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | || ||||||| ||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  22602823 cattggttccaattagtttcaacttaattatgatcatgtttttctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 22602724  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  22602723 cataaatattt 22602713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 36366313 - 36366203
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||| |||||||||||| ||||||| | || |||||||||||   ||| ||||||| ||||||   ||||||||||||||||||||||||||||||    
T  36366313 cattggtttcaattagtttcaacttaattatgatcatgttttcctgatttcaggaacaaagtatatcctattttcatgaatcaagacttggtaaagcttt 36366214  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  36366213 cataaatattt 36366203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 38041739 - 38041596
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata-- 238  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||| ||||||||| | ||  |||||||     ||| |||||||||||||      
T  38041739 atgtaatcgtaatttgcacattattggttccttcatcggttccaattagtttaatcttaattattatgttgttttctcaatctcgtgaacaaaatatatg 38041640  T
Q  239 -tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     |||||| ||||||||||||  ||||||||||| ||||||||||    
T  38041639 ctctttttatgaatcaagacccggtaaagctttgataaatattt 38041596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 2367099 - 2366956
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata-- 238  Q
    ||||||| ||||||| ||||| ||| |||  ||||||||||||||||||||| |||||||   | ||  |||||||||    ||||||||||||||||      
T  2367099 atgtaattgtaatttccacatcattggttccttcattggttccaattagtttaatcttaacaattatgttgttttccttatttcatgaacaaaatatatg 2367000  T
Q  239 -tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     ||||||||||||||||||| || ||| |||||  |||||||||    
T  2366999 ctcttttcatgaatcaagacctgataaggctttgttaaatattt 2366956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 37464476 - 37464544
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| | ||||||||||||||||||||||    
T  37464476 aagacttgataaagttttcataaatattttgataaagatttataatttttgtgcaatattcattaattt 37464544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 3028842 - 3028928
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| ||||||  ||| ||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  3028842 taatttgcacattgttagttccttcgttggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 3028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 35540050 - 35539964
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  35540050 taatttgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 35539964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 29251744 - 29251710
Alignment:
Q  3 tcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||| ||||||||||||||||||||    
T  29251744 tcacccaattgattagcctatgatcttaacctata 29251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 3150750 - 3150649
Alignment:
Q  135 actaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaa 234  Q
    |||| ||||||||  |||| ||||| || || |||  ||||||||||| |||||||||||| |||||| ||||  |||||||||   ||| |||||||||    
T  3150750 actattatgtaatgttaatctgcactttgttggttccttcattggttctaattagtttcatgttaattgtaatgttgttttcctaatctcctgaacaaaa 3150651  T
Q  235 ta 236  Q
    ||    
T  3150650 ta 3150649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 18037348 - 18037307
Alignment:
Q  279 tttgataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  18037348 tttgataaagatttataatgtttgtgcaatattcattaattt 18037307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 3397269 - 3397201
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || ||| |||||||||||||||||||| |||  |||||| ||||  |||||||||    
T  3397269 taatctgcacattgttggttcattcattggttccaattagtatcaagttaattgtaatgttgttttcct 3397201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 7285765 - 7285833
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  7285765 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 7285833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 19448091 - 19448159
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  19448091 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 19448159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22604706 - 22604674
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22604706 tgtcacccaattgattcgtctatgatcttaacc 22604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 33611271 - 33611203
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  33611271 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 33611203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 34374489 - 34374425
Alignment:
Q  172 ttcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  34374489 ttcattggttccaattagtgtcatgttaattataatgttgttttcctaatctcttgaacaaaata 34374425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 35539509 - 35539429
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaa 146  Q
    |||||||||||| ||| | ||||| |||||||||| ||||| |||| ||| |||  ||||||||||| |  ||||||||||    
T  35539509 tgatgtaaatatgggtatcaatccttttttggtaactctataacaacaacacttttttttataattttggataatatgtaa 35539429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36368197 - 36368165
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36368197 tgtcacccaattgattcgtctatgatcttaacc 36368165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 3929937 - 3929827
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| ||||||| | ||  |||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  3929937 cattggttccaattagtttcaacttaattatgatcgtgttttcctggtttcatgaacaaagtatatcatcttttcatgaatcaagacttggtagagcttt 3929838  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  3929837 cataaatattt 3929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 20767409 - 20767519
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    ||||||||||||||||||||| | ||||| | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  20767409 cattggttccaattagtttcaacctaattatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 20767508  T
Q  271 cataaatattt 281  Q
    |||||||||||    
T  20767509 cataaatattt 20767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 26429312 - 26429201
Alignment:
Q  173 tcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctt 269  Q
    |||||||||||||||||||||| ||||||| | || ||||||| |||   ||||||||| | ||||||   ||||||||||||||||||||||| |||||    
T  26429312 tcattggttccaattagtttcaacttaattatgatcatgtttttctgttttcatgaacatagtatatcctcttttcatgaatcaagacttggtagagctt 26429213  T
Q  270 tcataaatattt 281  Q
    ||||||||||||    
T  26429212 tcataaatattt 26429201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 23909964 - 23909821
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata-- 238  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||| ||||||||| | ||  |||||||     |||||||||||||||||      
T  23909964 atgtaatcgtaatttgcacattattggttccttcatcggttccaattagtttaatcttaattattatgttgttttctcaatctcatgaacaaaatatatg 23909865  T
Q  239 -tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     |||||| ||||||||||||  | ||||||||| | ||||||||    
T  23909864 ctctttttatgaatcaagacccgataaagctttgagaaatattt 23909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 34266137 - 34266000
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata-- 238  Q
    |||||||||||||||| |||| ||| |||  || |||||||||||||||||| ||||||||| | ||  ||| ||| ||  |||||||||||||||||      
T  34266137 atgtaatcgtaatttggacatcattggttcctttattggttccaattagtttaatcttaattattatgttgtgttcttgatctcatgaacaaaatatatg 34266038  T
Q  239 -tcttttcatgaatcaagacttggtaaagctttcataa 275  Q
     |||||||||||||||| || |||||| ||||| ||||    
T  34266037 ctcttttcatgaatcaatacctggtaaggctttgataa 34266000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 24294659 - 24294745
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||| ||||||||||| ||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  24294659 taatctgcacattgttggtttcttcattggttcaaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 24294745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3931783 - 3931751
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacc 33  Q
    |||||||||||||||||| ||||||||||||||    
T  3931783 tgtcacccaattgattcgtctatgatcttaacc 3931751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 13662526 - 13662458
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  13662526 taatctgcacattgttggttgcttcattggttccaattagtatcatgttaattataatgttgttttcct 13662458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 28565836 - 28565768
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  28565836 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcct 28565768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 31619827 - 31619887
Alignment:
Q  158 acattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||| || |||| ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  31619827 acattgttggtttcttcattggttccaattagtatcatgttaattgtaatgttgttttcct 31619887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 34692245 - 34692313
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  34692245 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 34692313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 43254805 - 43254737
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| ||||||||||| |||  ||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  43254805 taatctgcacattattggttccttcattggttcaaattagtatcatgttaattataatgttgttttcct 43254737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 52521688 - 52521620
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    ||||||||||||| || |||  ||||||||||| ||||||| |||| |||||| ||||  |||||||||    
T  52521688 taatttgcacattgttggttccttcattggttctaattagtatcatgttaattgtaatgttgttttcct 52521620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 1691675 - 1691532
Alignment:
Q  141 atgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatata-- 238  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||| ||||||||| | ||  |||||||     |||||||||||||||||      
T  1691675 atgtaatcgtaatttgcacattattggttccttcatcggttccaattagtttaatcttaattattatgttgttttctcaatctcatgaacaaaatatatg 1691576  T
Q  239 -tcttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
     |||||| ||||||||||||  | ||||||||| | ||||||||    
T  1691575 ctctttttatgaatcaagacccgataaagctttgagaaatattt 1691532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 7364648 - 7364757
Alignment:
Q  174 cattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagcttt 270  Q
    |||||||||||||||||||||  ||| || | || ||||||||||||  ||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  7364648 cattggttccaattagtttcaattta-ttatgatcatgttttcctggtttcatgaacaaagtatatcctcttttcatgaatcaagacttggtagagcttt 7364746  T
Q  271 cataaatattt 281  Q
      |||||||||    
T  7364747 ggtaaatattt 7364757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 24278957 - 24279018
Alignment:
Q  260 ggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  24278957 ggtaaagctttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 24279018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 7984254 - 7984174
Alignment:
Q  122 ttttataatttcgactaatatgtaatcgtaatttgcacattattagtttattcattggttccaattagtttcatcttaatt 202  Q
    |||||||||||   ||||||||||||| |||||||||||| ||| |||  ||||||||||||||||| ||| |||||||||    
T  7984254 ttttataattttagctaatatgtaatcttaatttgcacatcattggttccttcattggttccaattaatttaatcttaatt 7984174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 11866362 - 11866294
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| ||||| |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  11866362 aagacttgataaagttttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 11866294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 35357755 - 35357687
Alignment:
Q  253 aagacttggtaaagctttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||| |||||||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||    
T  35357755 aagacttgataaagctttcataaatattttgataaagatttataatgtttgtacaatattcattaattt 35357687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 32726180 - 32726106
Alignment:
Q  210 tgttttcctggactcatgaacaaaatatatc---ttttcatgaatcaagacttggtaaagctttcataaatattt 281  Q
    ||||||||||| ||||||| |||||| ||||   |||||||||||||||||||| || ||||||| |||||||||    
T  32726180 tgttttcctggtctcatgagcaaaatgtatccctttttcatgaatcaagacttgatagagctttcgtaaatattt 32726106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 36632639 - 36632509
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| ||| | ||||  |||||||||| ||||| |||||||| ||   ||||||||||| |  |||||||||||| |||||   |||| |||    
T  36632639 tgatgtaaatatgggtatcaatcattttttggtaactctataacaataacactctattttataatttgggataatatgtaatcataattcaaacatcatt 36632540  T
Q  166 agtttattcattggttccaattagtttcatc 196  Q
     ||| ||| |||||||||||||  |||||||    
T  36632539 ggttcatttattggttccaattgttttcatc 36632509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 3711069 - 3711122
Alignment:
Q  268 tttcataaatattt-gataaagataaatagtgtttgtgcaatattcattaattt 320  Q
    |||||||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  3711069 tttcataaatattttgataaagatttataatgtttgtgcaatattcattaattt 3711122  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7362777 - 7362813
Alignment:
Q  1 tgtcacccaattgattcgcctatgatcttaacctata 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7362777 tgtcacccaattgattcgtctatgatcttaacctata 7362813  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 25283381 - 25283337
Alignment:
Q  121 cttttataatttcgactaatatgtaatcgtaatttgcacattatt 165  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||    
T  25283381 cttttataattttggctaatatgtaatcgtaatttgtacattatt 25283337  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 26827657 - 26827743
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  26827657 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 26827743  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 30570685 - 30570599
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  30570685 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 30570599  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 30572565 - 30572479
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  30572565 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcctaatctcttgaacaaaata 30572479  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 33663929 - 33663843
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || ||| |||||||||||||||||||| |||| ||| || ||||  |||||||||   ||| |||||||||||    
T  33663929 taatctgcacattgttggttcattcattggttccaattagtatcatgttagttataatgttgttttcctaatctcttgaacaaaata 33663843  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 24278883 - 24278936
Alignment:
Q  94 ttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaat 147  Q
    ||||||| ||||||||| || |||| |||||||||||||  |||||||||||||    
T  24278883 ttggtaactctatgacagtagcgctcacttttataattttaactaatatgtaat 24278936  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 45204608 - 45204563
Alignment:
Q  66 tgatgtaaatattggtgttaatccctttttggtaattctatgacaa 111  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||||    
T  45204608 tgatgtaaatatgggtatcaatccttttttggtaattctatgacaa 45204563  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 30567000 - 30566932
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  30567000 taatctgcacattgttggttccttcattggttccaattagtatcatgttaattgtaatgttgttttcct 30566932  T

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Target: scaffold0242 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 3587 - 3501
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcctggactcatgaacaaaata 236  Q
    |||| |||||||| || |||| ||||||||||||||||||| |||| |||||| ||||  |||||||||   ||| |||||||||||    
T  3587 taatctgcacattgttggtttcttcattggttccaattagtatcatgttaattataatgttgttttcctaatctcttgaacaaaata 3501  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 101383 - 101508
Alignment:
Q  71 taaatattggtgttaatccctttttggtaattctatgacaataacgcttacttttataatttcgactaatatgtaatcgtaatttgcacattattagttt 170  Q
    ||||||| ||| | ||||| |||||||||| ||||| |||| ||||||   ||||||||||| |  |||||||||||| |||||  |||||||||  ||     
T  101383 taaatatgggtatcaatccttttttggtaactctataacaaaaacgctcttttttataattttggataatatgtaatcataattcacacattattgtttc 101482  T
Q  171 attcattggttccaattagtttcatc 196  Q
     || |||||||||||||  |||||||    
T  101483 ctttattggttccaattgttttcatc 101508  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 152288 - 152220
Alignment:
Q  150 taatttgcacattattagtttattcattggttccaattagtttcatcttaattttaataatgttttcct 218  Q
    |||| |||||||| || |||  ||||||||||||||||||| |||| |||||| ||||  |||||||||    
T  152288 taatctgcacattgttggttgcttcattggttccaattagtatcatgttaattataatgttgttttcct 152220  T

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