View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_high_1 (Length: 555)
Name: NF12976_high_1
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 43193383 - 43193131
Alignment:
| Q |
14 |
cacagacaccagtaaaaacttgaaaaaatgaattaattgatcttaagtgcatgtgttgaa-gaatgcgcagtcactaaacaatataactacttaacttaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43193383 |
cacagacaccagtaaaaacttgaaaaaatgaattaattgatcttaagtgcatgtgttgaaagaatgcgcagtcactaaacaatataactacttaacttaa |
43193284 |
T |
|
| Q |
113 |
aaccagaaaattgtcaaaggaggaagaattacataccaaacttgatttaagcttctcgagaaattcactgttcttgaatccatcaaaagaactacgcttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43193283 |
aaccagaaaattgtcaaaggaggaagaattacataccaaacttgatttaagcttctcgagaaattcactgttcttgaatccatcaaaagaactacgcttc |
43193184 |
T |
|
| Q |
213 |
tcaaactctttaatcctcgttttcaaaaccctaatcggttcccagtccctagt |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43193183 |
tcaaactctttaatcctcgttttcaaaaccctaatcggttcccagtccctagt |
43193131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 332 - 536
Target Start/End: Complemental strand, 43193064 - 43192860
Alignment:
| Q |
332 |
aactccactctcaaaatccacaaacccttcctccgacacaatagcgttcttaatcgccgataaatcaatccgaatcttcgctctcggcgtccacttctct |
431 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43193064 |
aactccactctcaaaatccacaaacccttcctccgacacaatagcgttcttaatcgccgataaatcaatccgaatcttcgctctcggcgtccacttctcc |
43192965 |
T |
|
| Q |
432 |
aaaaccttcttactaaaatccggcgaagaataagcgcgtcgaatctccgacaatttcggctgtaacttcttcacgaattctatctccgccgccggcggag |
531 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
43192964 |
aaaaccttcttactaaaatccggcgaagaataagcgcgtcgaatctccgacaatttcggctgtaatttcttcacgaattctatctccgccgccggcggag |
43192865 |
T |
|
| Q |
532 |
acctc |
536 |
Q |
| |
|
||||| |
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|
| T |
43192864 |
acctc |
43192860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 44287848 - 44287881
Alignment:
| Q |
18 |
gacaccagtaaaaacttgaaaaaatgaattaatt |
51 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
44287848 |
gacaccggtaaaaacttgaaaaaatgaattaatt |
44287881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 6273839 - 6273874
Alignment:
| Q |
18 |
gacaccagtaaaaacttgaaaaaatgaattaattga |
53 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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|
| T |
6273839 |
gacaccagttaaaacttgaaaaaatgaattaattga |
6273874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 6274481 - 6274516
Alignment:
| Q |
18 |
gacaccagtaaaaacttgaaaaaatgaattaattga |
53 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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|
| T |
6274481 |
gacaccagttaaaacttgaaaaaatgaattaattga |
6274516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 20154134 - 20154101
Alignment:
| Q |
18 |
gacaccagtaaaaacttgaaaaaatgaattaatt |
51 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
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|
| T |
20154134 |
gacaccggtaaaaacttgaaaaaatgaattaatt |
20154101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 20203336 - 20203369
Alignment:
| Q |
18 |
gacaccagtaaaaacttgaaaaaatgaattaatt |
51 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
20203336 |
gacaccggtaaaaacttgaaaaaatgaattaatt |
20203369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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