View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12976_high_2 (Length: 455)
Name: NF12976_high_2
Description: NF12976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12976_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 438
Target Start/End: Complemental strand, 9356608 - 9356191
Alignment:
| Q |
26 |
acatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaatgaggttaatgcaacttcaatcgaagttgcaaagaca |
125 |
Q |
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| T |
9356608 |
acatgagagaagattgcaaaattttcaagcaatttaaaggtttaaatgagaatcgttgttaaatgaggccgatgcagcttcaatcgaagttgtaaagaaa |
9356509 |
T |
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| Q |
126 |
tgaaaaaatca-----gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatt |
220 |
Q |
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| T |
9356508 |
taaaaaaaaaaaatttgatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatt |
9356409 |
T |
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| Q |
221 |
tgtgaactagctaaaggcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttc |
320 |
Q |
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| T |
9356408 |
tgagaactaggtaaaggcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttc |
9356309 |
T |
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| Q |
321 |
ttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaagtgtttgcaaat |
420 |
Q |
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| T |
9356308 |
ttgcaatagatgataggagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtctctccttcctggaaaatgtttggaaat |
9356209 |
T |
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| Q |
421 |
gtgtgcccatttggtacc |
438 |
Q |
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| T |
9356208 |
gtgtgcccatttggtacc |
9356191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 137 - 438
Target Start/End: Complemental strand, 9348467 - 9348166
Alignment:
| Q |
137 |
gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacctatttgtgaactagctaaag |
236 |
Q |
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| T |
9348467 |
gatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacccatttgagaactaggtaaag |
9348368 |
T |
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| Q |
237 |
gcctagtgagattgagattgaattcatcaatgggacttgttatggcaaattttgctggtatttcatatgttagcttttcctttcttgcaatagatgatag |
336 |
Q |
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| T |
9348367 |
gcctagtgaggttgagattggattcatcaatgggacttgtgatggcaaattttgctgggatttcatatgttagcttttcctttcttgcaatagatgatag |
9348268 |
T |
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| Q |
337 |
tagttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaagtgtttgcaaatgtgtgcccatttggta |
436 |
Q |
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| T |
9348267 |
gagttccctttgcctcctagccttgatcacatggtaatgattctttagtgcattgtctctccttcctggaaaatgtttggaaatgtgtgcccatttggta |
9348168 |
T |
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| Q |
437 |
cc |
438 |
Q |
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|| |
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| T |
9348167 |
cc |
9348166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 287 - 438
Target Start/End: Complemental strand, 9360890 - 9360739
Alignment:
| Q |
287 |
tttgctggtatttcatatgttagcttttcctttcttgcaatagatgatagtagttccctttgcctcctagccttgatcacatgaaaatgattcttcacag |
386 |
Q |
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| T |
9360890 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttcctagccataatcacatgaaaatgattcttcagtg |
9360791 |
T |
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| Q |
387 |
cattgtctgtccttccaggaaagtgtttgcaaatgtgtgcccatttggtacc |
438 |
Q |
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| T |
9360790 |
cattgtctgtccttccaggaaagaatttgcaaatgtgtgaccatttgttacc |
9360739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 9348549 - 9348473
Alignment:
| Q |
13 |
aatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaat |
89 |
Q |
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| T |
9348549 |
aatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaat |
9348473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 33825640 - 33825709
Alignment:
| Q |
339 |
gttccctttgcctcctagccttgatcacatgaaaatgattcttcacagcattgtctgtccttccaggaaa |
408 |
Q |
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| T |
33825640 |
gttccctatgtcttctagccatgatcacatgccaatgattcttcactgcattatctgtcctccctggaaa |
33825709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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